6cvf: Difference between revisions

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'''Unreleased structure'''


The entry 6cvf is ON HOLD until Paper Publication
==Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with cytidine diphosphate==
<StructureSection load='6cvf' size='340' side='right'caption='[[6cvf]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[6cvf]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Myctu Myctu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CVF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6CVF FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CDP:CYTIDINE-5-DIPHOSPHATE'>CDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3fgn|3fgn]], [[3fpa|3fpa]], [[3fmi|3fmi]], [[3fmf|3fmf]], [[4wop|4wop]], [[6cve|6cve]], [[6cvu|6cvu]], [[6cvv|6cvv]], [[6czb|6czb]], [[6czc|6czc]], [[6czd|6czd]], [[6cze|6cze]]</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bioD, Rv1570, MTCY336.33c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dethiobiotin_synthase Dethiobiotin synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.3.3 6.3.3.3] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6cvf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cvf OCA], [http://pdbe.org/6cvf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6cvf RCSB], [http://www.ebi.ac.uk/pdbsum/6cvf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6cvf ProSAT]</span></td></tr>
</table>
== Function ==
[[http://www.uniprot.org/uniprot/BIOD_MYCTU BIOD_MYCTU]] Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring.<ref>PMID:20565114</ref>  


Authors: Thompson, A.P., Bruning, J.B., Wegener, K.L., Polyak, S.W.
==See Also==
 
*[[Dethiobiotin synthetase 3D structures|Dethiobiotin synthetase 3D structures]]
Description: Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with cytidine diphosphate
== References ==
[[Category: Unreleased Structures]]
<references/>
[[Category: Polyak, S.W]]
__TOC__
[[Category: Bruning, J.B]]
</StructureSection>
[[Category: Thompson, A.P]]
[[Category: Dethiobiotin synthase]]
[[Category: Wegener, K.L]]
[[Category: Large Structures]]
[[Category: Myctu]]
[[Category: Bruning, J B]]
[[Category: Polyak, S W]]
[[Category: Thompson, A P]]
[[Category: Wegener, K L]]
[[Category: Enzyme]]
[[Category: Nucleotide triphosphate binding]]
[[Category: Synthetase]]
[[Category: Transferase]]

Revision as of 11:46, 8 January 2020

Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with cytidine diphosphateCrystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with cytidine diphosphate

Structural highlights

6cvf is a 4 chain structure with sequence from Myctu. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
Gene:bioD, Rv1570, MTCY336.33c (MYCTU)
Activity:Dethiobiotin synthase, with EC number 6.3.3.3
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[BIOD_MYCTU] Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring.[1]

See Also

References

  1. Dey S, Lane JM, Lee RE, Rubin EJ, Sacchettini JC. Structural characterization of the Mycobacterium tuberculosis biotin biosynthesis enzymes 7,8-diaminopelargonic acid synthase and dethiobiotin synthetase . Biochemistry. 2010 Aug 10;49(31):6746-60. PMID:20565114 doi:10.1021/bi902097j

6cvf, resolution 2.30Å

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