6c66: Difference between revisions

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==CRISPR RNA-guided surveillance complex, pre-nicking==
==CRISPR RNA-guided surveillance complex, pre-nicking==
<StructureSection load='6c66' size='340' side='right' caption='[[6c66]], [[Resolution|resolution]] 3.66&Aring;' scene=''>
<StructureSection load='6c66' size='340' side='right'caption='[[6c66]], [[Resolution|resolution]] 3.66&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6c66]] is a 15 chain structure with sequence from [http://en.wikipedia.org/wiki/ ] and [http://en.wikipedia.org/wiki/Thefy Thefy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C66 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6C66 FirstGlance]. <br>
<table><tr><td colspan='2'>[[6c66]] is a 15 chain structure with sequence from [http://en.wikipedia.org/wiki/ ] and [http://en.wikipedia.org/wiki/Thefy Thefy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C66 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6C66 FirstGlance]. <br>
Line 20: Line 20:
==See Also==
==See Also==
*[[CRISPR type I-E (Cascade)|CRISPR type I-E (Cascade)]]
*[[CRISPR type I-E (Cascade)|CRISPR type I-E (Cascade)]]
*[[Helicase 3D structures|Helicase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Thefy]]
[[Category: Thefy]]
[[Category: Ke, A]]
[[Category: Ke, A]]

Revision as of 12:31, 18 December 2019

CRISPR RNA-guided surveillance complex, pre-nickingCRISPR RNA-guided surveillance complex, pre-nicking

Structural highlights

6c66 is a 15 chain structure with sequence from [1] and Thefy. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Gene:Tfu_1593 (THEFY), Tfu_1592 (THEFY), Tfu_1590 (THEFY), Tfu_1591 (THEFY), Tfu_1589 (THEFY), Tfu_1588 (THEFY)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

Type I CRISPR-Cas system features a sequential target-searching and degradation process on double-stranded DNA, by the RNA-guided Cascade complex and the nuclease-helicase fusion enzyme Cas3, respectively. Here we present a 3.7 A resolution cryo-EM structure of the Type I-E Cascade/R-loop/Cas3 complex, poised to initiate DNA degradation. Cas3 distinguishes Cascade conformations and only captures the R-loop forming Cascade, to avoid cleaving partially complementary targets. Its nuclease domain recruits the non-target strand (NTS) DNA at a bulged region for the nicking of single-stranded DNA. An additional 4.7 A resolution cryo-EM structure captures the post-nicking state, in which the severed NTS retracts to the helicase entrance, to be threaded for ATP-dependent processive degradation. These snapshots form the basis for understanding RNA-guided DNA degradation in Type I-E CRISPR-Cas systems.

Structure basis for RNA-guided DNA degradation by Cascade and Cas3.,Xiao Y, Luo M, Dolan AE, Liao M, Ke A Science. 2018 Jun 7. pii: science.aat0839. doi: 10.1126/science.aat0839. PMID:29880725[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Xiao Y, Luo M, Dolan AE, Liao M, Ke A. Structure basis for RNA-guided DNA degradation by Cascade and Cas3. Science. 2018 Jun 7. pii: science.aat0839. doi: 10.1126/science.aat0839. PMID:29880725 doi:http://dx.doi.org/10.1126/science.aat0839

6c66, resolution 3.66Å

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OCA