4xva: Difference between revisions

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==Crystal structure of wild type cytochrome c peroxidase==
==Crystal structure of wild type cytochrome c peroxidase==
<StructureSection load='4xva' size='340' side='right' caption='[[4xva]], [[Resolution|resolution]] 2.66&Aring;' scene=''>
<StructureSection load='4xva' size='340' side='right'caption='[[4xva]], [[Resolution|resolution]] 2.66&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4xva]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XVA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4XVA FirstGlance]. <br>
<table><tr><td colspan='2'>[[4xva]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XVA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4XVA FirstGlance]. <br>
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</div>
</div>
<div class="pdbe-citations 4xva" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 4xva" style="background-color:#fffaf0;"></div>
==See Also==
*[[Cytochrome c peroxidase 3D structures|Cytochrome c peroxidase 3D structures]]
== References ==
== References ==
<references/>
<references/>
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[[Category: Baker's yeast]]
[[Category: Baker's yeast]]
[[Category: Cytochrome-c peroxidase]]
[[Category: Cytochrome-c peroxidase]]
[[Category: Large Structures]]
[[Category: Fischer, M]]
[[Category: Fischer, M]]
[[Category: Fraser, J S]]
[[Category: Fraser, J S]]

Revision as of 10:23, 27 November 2019

Crystal structure of wild type cytochrome c peroxidaseCrystal structure of wild type cytochrome c peroxidase

Structural highlights

4xva is a 4 chain structure with sequence from Baker's yeast. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
Gene:CCP1, CCP, CPO, YKR066C (Baker's yeast)
Activity:Cytochrome-c peroxidase, with EC number 1.11.1.5
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[CCPR_YEAST] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.

Publication Abstract from PubMed

Interrogating fragment libraries by X-ray crystallography is a powerful strategy for discovering allosteric ligands for protein targets. Cryocooling of crystals should theoretically increase the fraction of occupied binding sites and decrease radiation damage. However, it might also perturb protein conformations that can be accessed at room temperature. Using data from crystals measured consecutively at room temperature and at cryogenic temperature, we found that transient binding sites could be abolished at the cryogenic temperatures employed by standard approaches. Changing the temperature at which the crystallographic data was collected could provide a deliberate perturbation to the equilibrium of protein conformations and help to visualize hidden sites with great potential to allosterically modulate protein function.

One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites.,Fischer M, Shoichet BK, Fraser JS Chembiochem. 2015 May 28. doi: 10.1002/cbic.201500196. PMID:26032594[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Fischer M, Shoichet BK, Fraser JS. One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites. Chembiochem. 2015 May 28. doi: 10.1002/cbic.201500196. PMID:26032594 doi:http://dx.doi.org/10.1002/cbic.201500196

4xva, resolution 2.66Å

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OCA