110d: Difference between revisions

Revision as of 09:25, 2 May 2008

ANTHRACYCLINE-DNA INTERACTIONS AT UNFAVOURABLE BASE BASE-PAIR TRIPLET-BINDING SITES: STRUCTURES OF D(CGGCCG)/DAUNOMYCIN AND D(TGGCCA)/ADRIAMYCIN COMPL

OverviewOverview

The structures of two hexanucleotide-anthracycline complexes d(CGGCCG)/daunomycin and d(TGGCCA)/adriamycin have been determined using single-crystal X-ray diffraction techniques. In both cases the anthracycline molecule is bound to non-preferred d(YGG) base-pair triplet sites. For both complexes the crystals are tetragonal and belong to the space group P4(1)2(1)2. Unit-cell dimensions are a = 28.07 (2), c = 53.35 (1) and a = 28.01 (1), c = 52.99 (1) A, respectively, and the asymmetric unit of both structures consists of one strand of DNA, one drug molecule and approximately 50 water molecules. For the d(CGGCCG) complex the refinement converged with an R factor of 0.21 for 1108 reflections with F >/= 2sigma(F) in the resolution range 7.0-1.9 A. For the complex involving d(TGGCCA) the final R value was 0.22 for 1475 reflections in the range 7.0-1.7 A with the same criterion for observed data. Both complexes are essentially isomorphous with related structures but differ in terms of the number of favourable van der Waals interactions of the amino sugars of the drug molecules with the DNA duplexes and the formation in the minor groove of heterodromic pentagonal arrangements of hydrogen bonds involving water molecules which link the amino sugars to the DNA. These differences in structure are used to rationalize the lack of affinity of daunomycin-type anthracyclines for d(YGG) and d(YGC) sites.

About this StructureAbout this Structure

Full crystallographic information is available from OCA.

ReferenceReference

Anthracycline-DNA interactions at unfavourable base-pair triplet-binding sites: structures of d(CGGCCG)/daunomycin and d(TGGCCA)/adriamycin complexes., Leonard GA, Hambley TW, McAuley-Hecht K, Brown T, Hunter WN, Acta Crystallogr D Biol Crystallogr. 1993 Sep 1;49(Pt 5):458-67. PMID:15299505 Page seeded by OCA on Fri May 2 09:25:48 2008

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OCA

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 [[Image:110d.jpg|left|200px]]
- {{Structure
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 '''ANTHRACYCLINE-DNA INTERACTIONS AT UNFAVOURABLE BASE BASE-PAIR TRIPLET-BINDING SITES: STRUCTURES OF D(CGGCCG)/DAUNOMYCIN AND D(TGGCCA)/ADRIAMYCIN COMPL'''
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 ==About this Structure==
-D is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=110D OCA].
+Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=110D OCA].
 ==Reference==
 Anthracycline-DNA interactions at unfavourable base-pair triplet-binding sites: structures of d(CGGCCG)/daunomycin and d(TGGCCA)/adriamycin complexes., Leonard GA, Hambley TW, McAuley-Hecht K, Brown T, Hunter WN, Acta Crystallogr D Biol Crystallogr. 1993 Sep 1;49(Pt 5):458-67. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15299505 15299505]
-[[Category: Protein complex]]
 [[Category: Brown, T.]]
 [[Category: Hambley, T W.]]
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 [[Category: Leonard, G A.]]
 [[Category: McAuley-Hecht, K.]]
-[[Category: complexed with drug]]
+[[Category: Complexed with drug]]
-[[Category: double helix]]
+[[Category: Double helix]]
-[[Category: right handed dna]]
+[[Category: Right handed dna]]
+''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May  2 09:25:48 2008''
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 18:26:43 2008''