Myoglobin: Difference between revisions

Michal Harel (talk | contribs)
No edit summary
Michal Harel (talk | contribs)
No edit summary
Line 27: Line 27:
</StructureSection>
</StructureSection>


== 3D Structures of Myoglobin ==
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|
* '''Mb wild type'''
**[[2zsn]], [[2zso]], [[2zsp]], [[2zsq]], [[2zsr]], [[2zss]], [[2zst]], [[2zsx]], [[2zsy]], [[2zsz]], [[2zt0]], [[2zt1]], [[2zt2]], [[2zt3]], [[2zt4]], [[3e4n]], [[3e55]], [[3e5i]], [[3e5o]], [[3ecl]], [[3ecx]], [[3ecz]], [[3ed9]], [[3eda]], [[3edb]], [[2z6s]], [[1u7r]], [[1u7s]], [[1jp6]], [[1jp8]], [[1jp9]], [[1jpb]], [[1jw8]], [[1f6h]], [[1bz6]], [[1bzp]], [[1a6k]], [[1a6n]], [[1vxa]], [[1vxb]], [[1vxc]], [[1vxd]], [[1vxe]], [[1vxf]], [[1vxg]], [[1vxh]], [[1mlq]], [[1moa]], [[1mob]], [[1moc]], [[1mod]], [[4mbn]], [[5mbn]], [[1mbn]], [[4nxa]], [[4pnj]], [[5iks]], [[5jom]], [[5m3s]], [[5o41]], [[5oj9]], [[5oja]], [[5ojb]], [[5ojc]], [[5xl0]], [[5yce]]– SwMb - Sperm whale<br />
**[[1l2k]], [[1cq2]], [[1mbd]] – SwMb – Neutron<br />
**[[1wla]], [[1hsy]], [[2v1e]], [[2v1f]], [[2v1g]], [[2v1h]], [[2v1i]], [[2v1j]], [[2v1k]], [[4dc7]], [[4dc8]], [[5cn4]], [[5cn5]], [[5cn6]], [[5cn7]], [[5cn8]], [[5cn9]], [[5cnb]], [[5cnc]], [[5cnd]], [[5cne]], [[5cnf]], [[5cng]], [[5d5r]], [[5zze]] – hoMb - horse<br />
**[[1m6m]], [[1mwd]], [[1mnh]], [[1mnj]], [[1mnk]], [[1ycb]], [[1pmb]] – pMb - pig<br />
**[[1lhs]] – stMb – sea turtle<br />
**[[1mbs]] – Mb - seal<br />
**[[3qm5]], [[3qm6]], [[2nrl] – btMb – blackfin tuna<br />
**[[2nrm]] – btMb S-nitrosylated<br />
**[[1mba]], [[3mba]], [[4mba]] – AlMb - ''Aplysia limacine''<br />
**[[1uvy]] – Mb – ''Paramecium caudatum''<br />
* '''Mb mutants uncomplexed'''
**[[3rgk]] – hMb (mutant) – human<br />
**[[3m38]], [[3m39]], [[3m3a]], [[3m3b]], [[3k9z]], [[3h57]], [[3h58]], [[2e2y]], [[2ef2]], [[2oh8]], [[2oh9]], [[2oha]], [[2ohb]], [[2blh]], [[2bli]], [[1h1x]], [[1co8]], [[1n9h]], [[1n9i]], [[1n9x]], [[1naz]], [[1f63]], [[1f65]], [[1dti]], [[1co9]], [[1cp0]], [[1cp5]], [[1cpw]], [[1ch1]], [[1ch2]], [[1ch3]], [[1ch5]], [[1ch7]], [[1ch9]], [[1cik]], [[1cio]], [[1ofk]], [[1ofj]], [[102m]], [[1obm]], [[2mbw]], [[1tes]], [[1irc]], [[1mti]], [[1mtj]], [[1mtk]], [[1mlf]], [[1mlg]], [[1mlh]], [[1mlj]], [[1mlk]], [[1mll]], [[1mlm]], [[1mlo]], [[1mlr]], [[1mln]], [[1mls]], [[2mga]], [[2mgb]], [[2mgc]], [[2mgd]], [[2mge]], [[2mgf]], [[2mgg]], [[2mgh]], [[2mgi]], [[2mgj]], [[2mgk]], [[2mgl]], [[2mgm]], [[2spl]], [[2spm]], [[2spn]], [[2spo]], [[1fcs]], [[1j52]], [[1lue]], [[1o16]], [[3ogb]], [[3sdn]], [[3o89]], [[4fwx]], [[4fwz]], [[4it8]], [[4lpi]], [[4of9]], [[4ood]], [[4pq6]], [[4pqb]], [[4pqc]], [[4qau]], [[4tyx]], [[5b84]], [[5b85]], [[5c6y]], [[5hlq]], [[5ile]], [[5ilm]], [[5ilp]], [[5ilr]], [[5ut8]], [[5ut9]], [[5utb]], [[5utc]], [[5vnu]], [[5vrt]], [[5wjk]], [[5xkv]], [[5xkw]], [[5yzf]], [[5zeo]], [[6d45]], [[6jp1]], [[6g5t]], [[6g5b]], [[6g5a]], [[6f1a]], [[6f19]], [[6f18]], [[6f17]], [[5zzf]] - SwMb (mutant)<br />
**[[2bwh]] - SwMb (mutant) – Laue<br />
**[[3hc9]], [[3hen]], [[3heo]], [[3hep]], [[1nz2]], [[1nz3]], [[1rse]], [[1abs]], [[1xch]], [[1hrm]], [[1yma]], [[3rj6]], [[3wyo]], [[4ns2]], [[5z7f]], [[5z7e]] - hoMb (mutant) – horse<br />
**[[2vlx]] , [[2vly]], [[2vlz]], [[2vm0]] – hoMb fragment<br />
**[[1dm1]] – AlMb (mutant)<br />
* '''Mb containing a non-Fe protoporphyrin'''
**[[1yog]], [[1yoh]], [[1yoi]], [[1myz]], [[6n02]], [[6n03]], [[6mv0]] – SwMb+Co protoporphyrin<br />
**[[3mn0]] – SwMb (mutant)+Cu protoporphyrin+cyanide<br />
**[[4mxk]], [[4mxl]] - SwMb (mutant)+Zn protoporphyrin<br />
**[[1j3f]] – SwMb+Cr salophen<br />
**[[1ufj]], [[1ufp]] – SwMb (mutant)+Fe salophen<br />
**[[2o58]], [[2o5b]], [[3wi8]], [[5yl3]] – hoMb+Mn protoporphyrin<br />
**[[2o5l]] - hoMb+Mn protoporphyrin +methanol<br />
**[[2o5m]] - hoMb+Mn protoporphyrin +azide<br />
**[[2o5o]], [[2o5q]] - hoMb+Mn protoporphyrin +NO2<br />
**[[2o5s]] - hoMb+Co protoporphyrin +NO2<br />
**[[2o5t]] - hoMb+Co protoporphyrin<br />
**[[3wft]], [[3wfu]] - hoMb+Co tetrahydrocorrin<br />
**[[5azq]], [[5azr]] - hoMb+Co tetrahydrocorrin + CN<br />
**[[3rjn]] - hoMb+Zn deuteroporphyrin<br />
**[[4twu]], [[4twv]] – hoMb (mutant) +Zn deuteroporphyrin<br />
* Mb+NO
**[[1jdo]], [[1mlu]], [[5vzn]] – SwMb+NO<br />
**[[1hjt]], [[5hlu]], [[5vzo]], [[5vzp]], [[5vzq]] – SwMb (mutant)+NO<br />
**[[2frj]], [[2frk]], [[1npf]] - hoMb+NO<br />
**[[2nx0]] – BtMb+NO
* Mb+N2O
**[[4nxc]], [[5ut7]] – SwMb+N2O<br />
**[[5uta]], [[5utd]], [[6cf0]] – SwMb (mutant) +N2O<br />
* Mb+NO2
**[[2frf]], [[2fri]], [[3lr7]], [[3lr9]], [[3vau]], [[3v2v]], [[3v2z]]  - hoMb+NO2<br />
**[[5hlx]] – SwMb (mutant)+NO2<br />
* Mb+O2
**[[1ltw]], [[5hav]] - SwMb (mutant)+O2<br />
**[[1a6m]], [[1mbo]], [[2z6s]], [[2z6t]], [[6bmg]] – SwMb+O2<br />
**[[1mno]] - pMb (mutant)+O2<br />
**[[3vm9]] - hoMb + O
* Mb+CO
**[[2bw9]], [[1mz0]] - SwMb (mutant)+CO – Laue<br />
**[[2g0r]], [[2g0s]], [[2g0v]], [[2g0x]], [[2g0z]], [[2g10]], [[2g11]], [[2g12]], [[2g14]], [[2blj]], [[1dxc]], [[1dxd]], [[1do1]], [[1do3]], [[1do4]], [[1do7]], [[1abs]], [[1mcy]], [[1mbc]], [[3nml]] – SwMb (mutant)+CO<br />
**[[1bzr]] , [[1a6g]], [[1ajg]], [[1ajh]], [[1spe]], [[1mym]], [[1mbc]], [[5kkk]] – SwMb+CO<br />
**[[1myf]] - SwMb+CO – NMR<br />
**[[2mb5]] - SwMb+CO – Neutron<br />
**[[1dwr]], [[1dws]], [[1dwt]], [[5cmv]] – hoMb+CO<br />
**[[1mdn]], [[1m6c]] – pMb (mutant)+CO <br />
**[[1mwc]], [[1yca]] – pMb+CO<br />
**[[3qm7]] – btMb + CO
* Mb+OH
**[[1n9f]] – SwMb (mutant)+OH<br />
**[[1gjn]] – hoMb+OH
* Mb+cyano compounds
**[[2jho]] – SwMb cyanoMet<br />
**[[1ebc]], [[2cmm]] - SwMb+cyanide<br />
**[[1iop]] – SwMb+cyanide+hemin<br />
**[[108m]], [[101m]], [[104m]], [[105m]], [[2myc]], [[2myd]], [[2mya]], [[2mye]], [[2myb]] – SwMb+isocyanides<br />
**[[103m]], [[107m]], [[111m]], [[106m]], [[109m]], [[110m]], [[112m]] – SwMb (mutant) +isocyanides<br />
**[[6e04]], [[6303]], [[6e02]] - SwMb + nitroso derivative<br />
**[[5kd1]] - SwMb (mutant) + nitrosoamphetamine<br />
**[[3ba2]] – hoMb+cyanide<br />
**[[2fal]] – AlMb+cyanide<br />
**[[2fam]] – AlMb+thiocyanate<br />
**[[1lht]] – stMb+cyanide<br />
**[[1emy]] – Mb+cyanide – asian elephant<br />
**[[3qm8]] - btMb cyanoMet<br />
* Mb + N3
**[[3qm9]] – btMb + N3
* '''MMb'''
**[[1mgn]], [[1duk]] - SwMMb<br />
**[[1duo]] – SwMMb+methyl-imidazole<br />
**[[1myg]], [[1myh]], [[1myi]], [[1myj]], [[1ymb]] – pMMb<br />
**[[1ymc]] – hoSulfMMB + CN<br />
**[[1myt]] – MMb – yellowfin tuna<br />
* Other complexes of Mb
**[[3a2g]] – SwMb (mutant)+fluorescein<br />
**[[2w6x]], [[2w6y]] - SwMb (mutant)+Xe<br />
**[[2w6w]] - SwMb +Xe<br />
**[[2eb8]], [[2eb9]] – SwMb+Cu<br />
**[[4fwy]] - SwMb (mutant)+ Cu<br />
**[[3ase]] – SwMb + RuO3<br />
**[[2ekt]], [[2eku]] – SwMb+methyl-depropionatehemin<br />
**[[2d6c]] – SwMb+porphycene<br />
**[[1swm]], [[1mbi]] – SwMb+imidazole<br />
**[[3u3e]] – SwMb + phenol<br />
**[[6m8f]] – SwMb + sucrose<br />
**[[4h07]], [[5zzg]] - SwMb (mutant)+ phenol erivative<br />
**[[4h0b]] - SwMb (mutant)+ DMSO<br />
**[[1wvp]] – SwMb+tetrazolyl histidine<br />
**[[2evk]] – SwMb (mutant)+acetic acid<br />
**[[2evp]] - SwMb (mutant)+mercaptoethanol<br />
**[[1v9q]] - SwMb (mutant)+Mn salophen derivative<br />
**[[1dtm]] - SwMb (mutant)+4-methylimidazole<br />
**[[2nsr]] – hoMb+nitro methane<br />
**[[1npg]] – hoMb+nitrosoethane<br />
**[[2nss]] - hoMb+nitro benzene<br />
**[[1azi]] - hoMb+azide<br />
**[[1bje]] – hoMb (mutant)+azide<br />
**[[1nz4]] – hoMb (mutant)+Cd<br />
**[[1nz5]] - hoMb (mutant)+Mn<br />
**[[2in4]] - hoMb+Zn-DME<br />
**[[1gjn]] – hoMb+hydroxide<br />
**[[1mni]] – pMb+imidazole<br />
**[[3qma]] - btMb+imidazole<br />
**[[5mba]] – AlMb+azide<br />
* '''apo-Mb'''
**[[1bvc]], [[1bvd]] – SwApo-Mb + biliverdin
}}
==External Resources==
==External Resources==
*{{Wikipedia|Myoglobin}}
*{{Wikipedia|Myoglobin}}

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Karl Oberholser, Eran Hodis, Judy Voet, David Canner, Alexander Berchansky, Michal Harel, Jaime Prilusky, Eric Martz, Ann Taylor, Joel L. Sussman, Karsten Theis