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| </StructureSection> | | </StructureSection> |
| == 3D structures of ion channels ==
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| Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
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| {{#tree:id=OrganizedByTopic|openlevels=0|
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| * Potassium channel See: [[Potassium_Channel#Additional_Structures_of_Potassium_Channels|Potassium Channels]]
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|
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| * Calcium channel
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|
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| **[[2d46]] – hVDCC β 4a – human - NMR<br />
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| **[[6nq0]], [[6nq1]], [[6nq2]] – hTpc2 – Cryo EM <br />
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| **[[2f3y]], [[2f3z]], [[2be6]] – hCav1.2 α 1C subunit+calmodulin <br />
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| **[[3oxq]] - hCav2.1 α 1C subunit IQ domain+hCalmodulin<br />
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| **[[2vay]], [[3oxq]] - hCav1.1 α 1S subunit IQ domain+hCalmodulin<br />
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| **[[1hvd]], [[1hve]], [[1hvf]], [[1hvg]] – hAnnexin V (mutant)<br />
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| **[[6jp5]], [[6jp8]] – rCav1.1 – rabbit – Cryo EM<br />
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| **[[6jpa]], [[6jpb]] – rCav1.1 + blocker – Cryo EM<br />
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| **[[3bxx]] – rCav2.1 α 1A subunit+calmodulin - rabbit<br />
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| **[[3bxl]] - rCav2.3 α 1E subunit+calmodulin<br />
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| **[[1t0h]] – rVDCC β 2A subunit <br />
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| **[[1t0j]] – rVDCC β 2A+α 1C <br />
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| **[[1vyt]] - rVDCC β 3+α 1C <br />
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| **[[1vyu]] – rVDCC β 3<br />
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| **[[1vyv]] - rVDCC β 4<br />
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| **[[1t3l]] - rVDCC β 2+α 1S <br />
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| **[[1t3s]] - rVDCC β 2<br />
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| **[[3dve]], [[3dvj]], [[3dvk]], [[3dvm]], [[3g43]] - rCav2.2 α 1B subunit+hCalmodulin<br />
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| **[[4dex]] - rCav2.2 α 1B + β 2 subunits<br />
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| **[[4dey]] - rCav2.2 α 1C + β 2 subunits<br />
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| **[[6byo]] – rCav1.1 α 1S <br />
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| **[[5gjw]] – rCav1.1 α 2/δ 1 + α 1S + β 1 – Cryo EM<br />
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| **[[5gjv]], [[3jbr]] – rCav1.1 α 2/δ 1 + α 1S + β 1 + γ 1 – Cryo EM<br />
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| **[[5v2q]], [[5v2p]] - raCav1.2 1C + 2 - rat<br />
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| **[[5vov]], [[5vou]], [[5vot]], [[5kk2]] - raVDCC g 2 + glutamate receptor – Cryo EM<br />
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| **[[6c9a]], [[6c96]] – mTpc1 - mouse <br />
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| **[[6c96]], [[6c9a]] – mTpc1 – Cryo EM <br />
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| **[[4zw2]] – mVDCC α 1S peptide + β 1 <br />
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| **[[5tua]], [[5e1j]], [[5dqq]] – AtTpc1 – ''Arabidopsis thaliana'' <br />
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| **[[6cx0]] – AtTpc1 (mutant) <br />
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| **[[6e1m]], [[6e1n]], [[6e1p]] – AtTpc1 (mutant) – Cryo EM <br />
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| **[[6e1k]] – AtTpc1 + antibody – Cryo EM <br />
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| **[[6mgv]], [[6mgw]], [[6ijz]] – AtOsca1.2 – Cryo EM <br />
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|
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| *See also [[Ryanodine receptor]]
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|
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| *Sodium channel
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|
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| **[[2kav]], [[2kbi]] - hNaV 1.2 α C-terminal EF-hand domain - NMR<br />
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| **[[5fdy]], [[5feb]] - hNaV 2 extracellular domain (mutant)<br />
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| **[[6agf]] - hNaV 1 + hNav 1.4 – Cryo EM<br />
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| **[[6j8e]] - hNaV 2 + hNav 1.2 + Mu-conotoxin – Cryo EM<br />
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| **[[6j8g]], [[6j8h]], [[6j8i]], [[6j8j]] - hNaV 2 + hNaV 1 + hNav 1.7 + toxin – Cryo EM<br />
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| **[[4l1d]] - hNaV β 3 IG domain <br />
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| **[[4mz2]] - hNaV β 4 extracellular domain <br />
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| **[[4mz3]] - hNaV β 4 extracellular domain (mutant)<br />
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| **[[6mba]], [[6mc9]] – hNaV 1.4 C terminal + calmodulin <br />
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| **[[4ovn]], [[5dbr]], [[4djc]], [[6mud]] – hNaV 1.5 α C terminal + calmodulin <br />
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| **[[4dck]], [[4jq0]] – hNaV 1.5 α C terminal + calmodulin + fibroblast growth factor <br />
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| **[[4jpz]] – hNaV 1.2 α C terminal + calmodulin + fibroblast growth factor 13<br />
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| **[[1byy]] - rNaCh IIA inactivation fragment<br />
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| **[[5jr0]] – rNaV 1.4 <br />
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| **[[6mue]] – raNaV 1.4 + calmodulin <br />
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| **[[1qg9]] – raNaCh IIA second repeat – NMR<br />
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| **[[5ayq]], [[5xax]], [[5xaw]] - mNaV 4 residues 30-160 <br />
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| **[[5xsy]] – eeNaV 1.4 + b 1 – electric eel - Cryo EM <br />
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| **[[5x0m]] – coNaCh - cockroach <br />
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| **[[6a90]], [[6a91]], [[6a95]] – coNaCh + toxin – Cryo EM <br />
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| **[[4bgn]] – NaCh – ''Caldalkalibacillus thermarum'' – Cryo EM<br />
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| **[[4lto]], [[4ltp]], [[4ltq]], [[5hk7]] – AeNaCh pore + cytoplasmic domains – ''Alkalilimnicola ehrlichii'' <br />
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| **[[4ltr]], [[5hkd]], [[5hk6]], [[5kj8]] – AeNaCh pore + cytoplasmic domains (mutant) <br />
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| **[[5yua]] - AbNaVab – ''Arcobacter butzleri''<br />
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| **[[5yuc]], [[5yub]] - AbNaVab (mutant) <br />
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|
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| * NH4+ channel
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|
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| **[[2nmr]], [[2nop]], [[2now]], [[2npc]], [[2npd]], [[2npe]], [[2npj]], [[2npg]], [[2npk]], [[1u77]], [[1u7c]], [[1u7g]], [[1xqe]], [[1xqf]], [[3c1g]] – EcAmCh – ''Escherichia coli''<br />
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| **[[3c1h]], [[3c1i]], [[3c1j]] – EcAmCh (mutant)<br />
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| **[[4nh2]] – EcAmCh + phosphatidylglycerol<br />
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| **[[2ns1]], [[2nuu]] – EcAmCh + nitrogen regulatory protein<br />
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| **[[2b2h]], [[2b2i]], [[2b2j]], [[2b2f]] – AmCh – ''Archaeglobus fulgidus''<br />
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| **[[3b9w]], [[3b9y]], [[3bhs]] – AmCh – ''Nitrosomonas europaea''
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|
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| * MscL and MscS
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|
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| **[[3hzq]] – MscL – ''Staphylococcus aureus''<br />
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| **[[2oar]] – MscL – ''Mycobacterium tuberculosis''<br />
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| **[[4lku]] – EcMscL C terminal<br />
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| **[[4y7k]], [[4y7j]] – MscL – Methanosarcina acetivorans<br />
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| **[[2oau]], [[2vv5]], [[4hwa]] - EcMscS<br />
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| **[[4age]], [[4agf]], [[5aji]] – EcMscS (mutant)<br />
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| **[[3t9n]], [[3udc]] – MscS – ''Thermoanaerobacter tengcongensis''<br />
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| **[[4hw9]] – MscS – ''Helicobacter pylori''<br />
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|
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| * Chloride channel
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|
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| **[[1rk4]], [[3swl]] - hClCh protein 1<br />
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| **[[6qvu]], [[6qvd]], [[6qvc]], [[6qvb]], [[6qv6]] - hClCh protein 1 – Cryo EM<br />
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| **[[3o3t]], [[3p8w]], [[3p90]], [[1k0o]], [[3qr6]], [[3tgz]], [[1k0m]], [[3uvh]], [[4iqa]], [[4jzq]], [[4k0g]], [[4k0n]] - hClCh protein 1 (mutant)<br />
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| **[[6coz]] - hClCh protein 1 C terminal<br />
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| **[[6coy]] - hClCh protein 1 transmembrane domain<br />
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| **[[1k0n]] - hClCh protein 1 (mutant) + glutathione<br />
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| **[[2per]], [[2r4v]], [[2r5g]] - hClCh protein 2<br />
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| **[[3kjy]], [[3fy7]] - hClCh protein 3 residues 1-230<br />
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| **[[2ahe]], [[2d2z]] – hClCh protein 4<br />
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| **[[2pfi]] - hClCh KA<br />
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| **[[2j9l]], [[2ja3]] - hClCh protein 5 + nucleotide<br />
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| **[[5tr1]], [[5tqq]] - bCIC (mutant) + antibody – bovine - Cryo EM<br />
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| **[[6erz]], [[6ery]] - mClCh protein 6<br />
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| **[[1ots]] - EcERIC + antibody<br />
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| **[[1ott]], [[1otu]] - EcERIC (mutant) + antibody<br />
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| **[[2d4z]] - TmClCh - ''Torpedo marmorata''<br />
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| **[[2yv9]] - CeClCh EXC-4 – ''Caenorhabditis elegans''<br />
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| **[[3rif]] - CeClCh + antibody + Glu + Ivermectin<br />
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| **[[5y7i]] - ClCh – ''Oreochromis mossabicus''<br />
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|
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| *CAMP-dependent chloride channel or cystic fibrosis transmembrane conductance regulator see CFTR in [[ABC transporter 3D structures]]
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|
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| * Anion Channel (Outer mitochondrial membrane protein porin 1)
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|
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| **[[2jk4]], [[2k4t]], [[5jdp]], [[5xdo]], [[5xdn]], [[6g73]], [[6g6u]] – hVDAC1<br />
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| **[[6djb]], [[5zsu]] – hVDAC1 subunit LRRC8A – Cryo EM<br />
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| **[[3emn]], [[4c69]] – mVDAC1 <br />
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| **[[6g9o]], [[6g9l]], [[6g8z]], [[6o00]], [[6nzz]], [[6nzw]] – mVDAC1 subunit LRRC8A – Cryo EM<br />
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| **[[6fnw]] – mVDAC1 subunit LRRC8A C terminal<br />
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| **[[4bum]] – zeVDAC2 – zebra fish<br />
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|
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| * Ligand-gated ion channel
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|
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| **[[2vl0]], [[2yn6]], [[3rqu]] – EchELIC – ''Erwinia chrysanthemi''<br />
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| **[[2yks]], [[4twh]] - EchELIC (mutant)<br />
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| **[[3rqw]] - EchELIC + acetylcholine<br />
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| **[[4twd]], [[4twf]] - EchELIC (mutant) + memantine derivative<br />
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| **[[3zkr]] - EchELIC + anesthetic<br />
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| **[[4a97]], [[4a98]] – EchELIC + benzodiazepine<br />
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| **[[2yoe]] - EchELIC + flurazepam + GABA<br />
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| **[[5lid]] – EchELIC + bromopromazine <br />
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| **[[5sxv]] – EchELIC + inhibitor <br />
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| **[[3eam]], [[3ehz]], [[4hfi]], [[4il4]], [[4ilc]], [[4npp]], [[4npq]], [[4qh1]], [[4qh5]], [[4qh4]], [[6f7a]], [[6f16]], [[4zzc]], [[6hzw]] – GvGLIC – ''Gloeobacter violaceus''br />
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| **[[3lsv]], [[3tls]], [[3tlt]], [[3tlu]], [[3tlv]], [[3tlw]], [[3uu3]], [[3uu4]], [[3uu5]], [[3uu6]], [[3uu8]], [[3uub]], [[3ei0]], [[4hfb]], [[4il9]], [[4ila]], [[4ilb]], [[4ire]], [[4lmj]], [[4lmk]], [[4lml]], [[5hcj]], [[5hcm]], [[5heg]], [[5heh]], [[5iux]], [[5v6o]], [[5v6n]], [[5nkj]], [[5njy]], [[5mzt]], [[5mzr]], [[5mzq]], [[4zzb]], [[6hy5]], [[6hy9]], [[6hya]], [[6hyr]], [[6hyv]], [[6hyw]], [[6hyx]], [[6hyz]], [[6hz0]], [[6hz1]], [[6hz3]], [[6emx]], [[6f0i]], [[6f0j]], [[6f0m]], [[6f0n]], [[6f0r]], [[6f0u]], [[6f0v]], [[6f0z]], [[6f10]], [[6f11]], [[6f12]], [[6f13]], [[6f15]], [[6f16]], [[6i08]] – GvGLIC (mutant)<br />
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| **[[3igq]] – GvGLIC N-terminal<br />
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| **[[2xq3]], [[2xq4]], [[2xq5]], [[2xq6]], [[2xq7]], [[2xqa]], [[2xq8]] – GvGLIC+inhibitor <br />
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| **[[2xq9]] – GvGLIC (mutant)+inhibitor<br />
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| **[[3p4w]], [[3p50]], [[4f8h]], [[4hfh]] – GvGLIC + general anaesthetic<br />
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| **[[4hfd]], [[5mvn]], [[5mvm]], [[5mur]], [[5muo]] – GvGLIC (mutant) + general anaesthetic<br />
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| **[[4hfc]], [[4hfe]] - GvGLIC (mutant) + alcohol<br />
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| **[[5j0z]] - GvGLIC + choline derivative<br />
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| **[[5l47]], [[5l4e]], [[5l4h]] - GvGLIC + barbiturate<br />
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| **[[6fl9]], [[6fli]], [[6fvq]], [[6fvr]], [[6fvs]] - STELIC – vent tica<br />
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|
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| * Cyclic Nucleotide-Gated channel
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|
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| **[[2zd9]], [[3beh]] - MlCNGC - ''Mesorhizobium loti''<br />
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| **[[4chv]], [[4chw]] – MlCNGC – Cryo EM<br />
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| **[[2ptm]] - CNGC C-terminal - ''Strongylocentratus purpuratus''<br />
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| **[[2kxl]], [[1vp6]] - MlCNGC ligand-binding domain <br />
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| **[[3co2]], [[4muv]], [[3clp]], [[1u12]] - MlCNGC ligand-binding domain (mutant) <br />
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| **[[3cl1]], [[2k0g]] - MlCNGC ligand-binding domain + cyclic nucleotide<br />
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| **[[3swf]] - CNGC CLZ domain - bovine<br />
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| **[[5h3o]] – CeCNGC – Cryo EM<br />
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|
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| *Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel
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|
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| **[[3etq]], [[3ffq]], [[3u0z]], [[3u10]], [[3u11]] - mCNGC C-terminal<br />
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| **[[1q3e]], [[1q43]], [[1q5o]] - mCNGC 2 fragment + nucleotide<br />
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| **[[2q0a]] - mCNGC 2 C-terminal (mutant)<br />
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| **[[3bpz]] - mCNGC 2 ligand-binding domain <br />
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| **[[5u6o]], [[5u6p]] – hCNGC 1 – Cryo EM<br />
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| **[[2mpf]] – hCNGC 2 ligand-binding domain - NMR<br />
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| **[[5khg]], [[5khh]], [[5khi]], [[5khj]], [[5khk]] – mCNGC 2 ligand-binding domain + nucleotide<br />
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| **[[3swy]] – hCNGC 3 CLZ domain<br />
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| **[[3otf]] – hCNGC 4 ligand-binding domain<br />
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| **[[2mng]] – hCNGC 4 ligand-binding domain - NMR<br />
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| **[[4hbn]] – hCNGC 4 ligand-binding domain (mutant)<br />
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| **[[4kl1]] – hCNGC 4 C terminal + nucleotide<br />
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| **[[4nvp]] – hCNGC 4 ligand-binding domain + 7-CH-cAMP<br />
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|
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| * Acid sensitive ion channel
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|
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| **[[3ij4]], [[2qts]], [[3s3w]], [[4nyk]], [[3ij4]], [[6ave]], [[5wku]], [[5wkv]], [[5wky]], [[5wkx]], [[6cmc]] – cASC – chicken<br />
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| **[[3s3x]], [[4fz0]], [[4fz1]] – cASC + psalmotoxin<br />
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| **[[4ntw]], [[4ntx]], [[4nty]] - cASC + neurotoxin + basic phospholipase A2<br />
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|
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| * ATP-Gated channel (AGC)
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|
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| **[[3h9v]], [[3i5d]] – zeAGC <br />
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| **[[4dw0]] – zeAGC (mutant)<br />
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| **[[4dw1]] – zeAGC + ATP<br />
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|
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| * Proton channel or matrix protein 2
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|
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| **[[2kj1]], [[2l0j]] - IVproton channel – Influenza virus - NMR<br />
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| **[[2kih]], [[2kwx]] – IVproton channel (mutant)<br />
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| **[[3bkd]], [[4qkm]], [[4qkl]], [[4qkc]], [[4qk7]], [[3lbw]], [[5ttc]], [[5um1]], [[5joo]] - IVproton channel transmembrane domain<br />
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| **[[1nyj]], [[1mp6]], [[2kad]] - IVproton channel transmembrane domain - NMR<br />
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| **[[5c02]], [[4rwc]], [[4rwb]], [[2kih]] - IVproton channel transmembrane domain (mutant)<br />
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| **[[2n70]] - IVproton channel transmembrane domain (mutant) - NMR<br />
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| **[[6bkk]], [[6bkl]], [[6bmz]], [[6boc]] - IVproton channel transmembrane domain + drug<br />
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| **[[2kqt]] - IVproton channel transmembrane domain + drug - NMR<br />
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| **[[2ly0]] - IVproton channel transmembrane domain (mutant) + drug - NMR<br />
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| **[[2rtf]] - IVproton channel + inhibitor - NMR<br />
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| **[[3c9j]] - IVproton channel transmembrane domain + inhibitor<br />
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|
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| * Voltage-gated hydrogen channel (VGHC)
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|
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| **[[3a2a]] – hVGHC C-terminal - NMR <br />
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| **[[5oqk]] – hVGHC residues 82-226 - NMR<br />
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| **[[3wkv]] – mVGHC <br />
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| **[[3vmx]], [[3vmy]], [[3vmz]] – mVGHC C-terminal<br />
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| **[[3vn0]], [[3vyi]] – mVGHC C-terminal (mutant)<br />
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|
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| *Glycerol facilitator
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|
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| **[[1lda]], [[1ldi]] - EcGlpF<br />
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| **[[1fx8]] - EcGlpF + glycerol<br />
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| **[[1ldf]] - EcGlpF (mutant)
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| }}
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| == Weblinks == | | == Weblinks == |
| *[http://www.tcdb.org/ The TCDB database] | | *[http://www.tcdb.org/ The TCDB database] |