Histone: Difference between revisions

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</StructureSection>
</StructureSection>
== 3D Structures of histone == 


Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|
*Histone
**[[1yqa]] – yH1 (mutant) – yeast – NMR<BR />
**[[1uss]], [[1ust]], [[1uhm]] – yH1 globular domain - NMR<BR /> 
**[[1ghc]] – cH1 – chicken - NMR<br />
**[[2xd7]], [[1zr3]], [[1zr5]], [[2fxk]] – hH2A macro domain – human<BR />
**[[4cay]] – hH2A +H2B<br />
**[[1yd9]] – H2A macro domain – rat<BR />
**[[1ku5]] – HPHA – ''Pyrococcus horikoshii''<BR />
**[[1b67]], [[1b6w]], [[1a7w]], [[1hta]] – MfHMFA – ''Methanococcus fervidus''<BR />
**[[1bfm]] – MfHB - NMR<BR />
**[[1f1e]] – H – ''Methanopyrus kandleri''<BR />
**[[1hst]] – cH5 <BR />
**[[3iid]], [[3iif]] – H2A macro domain + ADP-ribose<BR />
**[[2g9a]], [[2g99]], [[2h13]] – H3 + WD-repeat protein<br />
**[[1pfb]] – H3 + polycomb protein – ''Strongylocentrus purpuratus''
*Nucleosome core
**[[6n89]], [[6n88]] – hH1 + importin – Cryo EM<br />
**[[6h8p]] – hH1 + histone-lysine methyltransferase <br />
**[[3r45]] - hH4 + H3-like centromeric protein + Holliday junction recognition protein<BR />
**[[3nqj]], [[3nqu]] - hH4 + H3-like centromeric protein<BR />
**[[5vey]] - hH2A + H2B + polyubiquitin<br />
**[[5fug]] - hH2A + H2B + YL-1<br />
**[[4nft]] - hH2A + H2B + ANP32E<br />
**[[6miq]], [[6mio]], [[6min]] – hH3 + TFIID<br />
**[[6mim]], [[6mil]] – hH3 + AF9<br />
**[[5ja4]], [[5bnv]] – hH3.3 + H4 + TONSL + MCM2<br />
**[[5bo0]], [[5bnx]] – hH3.2 + H4 + ASF1B + MCM2<br />
**[[6mlc]] - hH4 + histone-lysine methyltransferase <br />
**[[6hbo]] – hH3.3 + histone-lysine methyltransferase - NMR<br />
**[[6o7g]] - XlH4 + histone-lysine methyltransferase – NMR<br />
**[[3qzs]], [[3qzt]] – XlH4 + nucleosome-remodeling factor subunit BPTF – ''Xenopus laevis''<BR />
**[[4h9n]], [[4h9o]], [[4h9p]], [[4h9q]], [[4h9r]], [[4h9s]], [[4hga]] - XlH3.3 (mutant) + H4 + death domain-associated protein 6<br />
**[[5kdm]] - XlH3.3 + H4 + death domain-associated protein + tegument protein<br />
**[[2io5]] - XlH3.1 + H4 + anti-silencing protein<BR />
**[[5g2e]] - XlH2A + H2B + NAP1<br />
**[[6n1z]] - XlH2A + H2B + importin<br />
**[[5bsa]], [[5bs7]] – XlH3.2 + H4 + SPT2<br />
**[[4eo5]] - XlH3.2 (mutant) + H4 (mutant) + histone chaperone ASF1<br />
**[[4ld9]] - XlH3.2 + H4 + H2A + H2B + widom sequence reverse + SIR3<br />
**[[2l5a]] - yH4/H3-like centromeric protein/SCM3<BR />
**[[2jss]] - yH2A/H2B + CHZ1 – NMR<BR />
**[[4wnn]] – yH32A + H2B + SPT2<br />
**[[2hue]] - yH3 + H4 + anti-silencing protein<BR />
**[[2xql]], [[3c9k]] - cH3.2 + H4 + H2A + H2B – EM<br />
**[[4uuz]] – DmH3 + H4 + DNA replication licensing factor – ''Drosophila melanogaster''<br />
**[[2yfv]], [[2yfw]] - H4 + H3-like centromeric protein + SCM3 –  ''Kluyveromyces lactis''<BR />
*Human nucleosome core + DNA
**[[3an2]], [[4x23]] – hH4 + H2A + H2B + H3-like centromeric protein + DNA<BR />
**[[3av1]], [[2av2]], [[3av2]], [[3waa]], [[3wa9]], [[3w99]], [[3w98]], [[3w97]], [[3w96]], [[5x7x]], [[3a6n]], [[3afa]], [[2cv5]], [[5jrg]], [[5gxq]], [[5gt3]], [[5gt0]], [[5gsu]], [[5gse]], [[5cpk]], [[5cpj]], [[5cpi]], [[5b33]], [[5b32]], [[5b31]], [[5b2j]], [[5b2i]], [[5b24]], [[5b0z]], [[5b0y]], [[5ay8]], [[5avc]], [[5avb]], [[5av9]], [[5av8]], [[5av6]], [[5av5]], [[5z5t]], [[4ym6]], [[4ym5]], [[5y0c]], [[5onw]], [[5ong]], [[5omx]] – hH3.2 + H4 + H2A + H2B + DNA<BR />
**[[5x0y]], [[5x0x]] – hH3 + H4 + H2A + H2B + DNA + SNF2<br />
**[[5z30]] – hH3.1 + H4 + H2A (mutant) + H2B + DNA <br />
**[[5y0d]] – hH3.1 + H4 + H2A + H2B (mutant) + DNA <br />
**[[4qlc]] – hH3 + H4 + H2A + H2B + H5 + DNA <br />
**[[6r25]] – hH3 + H4 + H2A + H2B + NPAC + lysine-specific histone demethylase + DNA – Cryo EM<br />
**[[3ayw]], [[3aze]], [[3azf]], [[3azg]], [[3azh]] - hH3.1 (mutant) + H4 + H2A + H2B + DNA<br />
**[[6r94]], [[6r93]] - hH3.1 + H4 + H2A + H2B + DNA – Cryo EM<br />
**[[6r92]], [[6r91]], [[6r90]], [[6r8z]], [[6r8y]] - hH3.1 + H4 + H2A + H2B + DNA damage-binding protein + DNA – Cryo EM<br />
**[[3azi]], [[3azj]], [[3azk]], [[3azl]], [[3azm]], [[3azn]], [[5b40]] - hH3.1 + H4 (mutant) + H2A + H2B + DNA<br />
**[[5e5a]] - hH3.2 + H4 + H2A + H2B + IE1 + DNA<br />
**[[6hkt]] - hH3 + H2A + H2B + DNA <br />
**[[5xf5]], [[5xf4]], [[5xf3]] - hH3.1 + H4 + H2A + H2B + Ru derivative + DNA<br />
*Xenopus nucleosome core + DNA
**[[6r1t]] - XlH3 + H2A + H2B + DNA – Cryo EM<br />
**[[3mnn]], [[3o62]], [[3lz0]], [[3lz1]], [[3lel]], [[3kuy]], [[3c1b]], [[3c1c]], [[2nzd]], [[2fj7]], [[1zbb]], [[1s32]], [[1p34]], [[1p3a]], [[1p3b]], [[1p3f]], [[1p3g]], [[1p3i]], [[1p3k]], [[1p3l]], [[1p3m]], [[1p3o]], [[1p3p]], [[1m18]], [[1m19]], [[1m1a]], [[1kx3]], [[1kx4]], [[1kx5]], [[1aoi]],  [[3reh]], [[3rei]], [[3rej]], [[3rek]], [[3rel]], [[3ut9]], [[3uta]], [[3utb]], [[5f99]], [[5dnn]], [[5dnm]], [[5cp6]], [[4z66]], [[4ys3]], [[4xzq]], [[5oy7]], [[5oxv]] - XlH3.2 + H4 + H2A + H2B + DNA<BR />
**[[6fq8]], [[6fq6]], [[6fq5]], [[6esi]], [[6esh]], [[6esg]], [[6esf]] - XlH3.2 + H4 + H2A + H2B + DNA – Cryo EM<br />
**[[5nl0]] - XlH3.2 + H4 + H2A + H2B + H1.0 + DNA<br />
**[[6om3]] - XlH3.2 + H4 + H2A + H2B + origin recognition complex + DNA<br />
**[[6jm9]] - XlH3.2 + H4 + H2A + H2B + histone-lysine methyltransferase + DNA – Cryo EM<br />
**[[6o96]], [[6nqa]], [[6nog]], [[6nn6]], [[6nj9]], [[6jma]], [[6j99]] - XlH3.2 + H4 + H2A + H2B + histone-lysine methyltransferase + ubiquitin + DNA – Cryo EM<br />
**[[6iy3]], [[6iy2]] - XlH3.2 + H4 + H2A + H2B + SNF2H + ADP + DNA – Cryo EM<br />
**[[5o9g]] - XlH3.2 + H4 + H2A + H2B + CHD1 + DNA – Cryo EM<br />
**[[6ftx]] - XlH3.1 + H4 + H2A + H2B + CHD1 + ubiquitin + DNA – Cryo EM<br />
**[[6hts]] - XlH3.1 + H4 + H2A + H2B + RuvB + CHD1 + actin-related protein + DNA – Cryo EM<br />
**[[6ne3]] - XlH3.2 (mutant) + H4 + H2A (mutant) + H2B + SNF2H + DNA – Cryo EM<br />
**[[5mlu]] - XlH3.2 + H4 + H2A + H2B + PFV GAG peptide + DNA<br />
**[[5kgf]] - XlH3.2 + H4 + H2A + H2B + 53BP1 + ubiquitin + DNA<br />
**[[5hq2]] - XlH3.2 + H4 + H2A + H2B + SRM1 + SetD8 + DNA<br />
**[[4zux]] - XlH3.2 + H4 + H2A + H2B + Saga-associated factors + polyubiquitin + UBP8 + DNA<br />
**[[4xuj]] - XlH3.2 + H4 + H2A + H2B + Ru derivative + DNA<br />
**[[4xu9]] - XlH3.2 (mutant) + H4 + H2A + H2B + Pt derivative + DNA<br />
**[[4xu8]] - XlH3.2 + H4 + H2A + H2B (mutant) + Pt derivative + DNA<br />
**[[2f8n]] - XlH3.1 + H4 + H2A + H2B + H3 + H2A macro domain + DNA<BR />
**[[1zla]] – XlH3 + H4 + H2A + H2B + H3 + antigen + DNA<BR />
**[[3mgp]], [[3mgq]], [[3mgr]], [[3mgs]], [[3lja]], [[3b6f]], [[3b6g]], [[4j8u]], [[4j8v]], [[4j8w]], [[4j8x]], [[4kgc]], [[5xf6]] - XlH3.2 + H4 + H2A + H2B + metal ion + DNA<BR />
**[[3kxb]] - XlH3.2 (mutant) + H4 + H2A + H2B (mutant) + DNA<BR />
**[[3kwq]] - XlH3.2 (mutant) + H4 + H2A + H2B + DNA<BR />
**[[3mvd]] - XlH3.2 + H4 + H2A + H2B + regulator of chromosome condensation + DNA<BR />
**[[3tu4]] - XlH3.2 + H4 + H2A + H2B + regulatory protein SIR3 + DNA<br />
**[[4r8p]] - XlH3.2 + H4 + H2A + H2B + polycomb complex protein + ring finger protein + DNA<br />
**[[6r1u]] – XlH3.2 + H4 + H2A + H2B + lysine-specific histone demethylase + DNA – Cryo EM<br />
**[[6k1p]], [[6jyl]], [[6iro]] – XlH3 + H4 + H2A + H2B + ISWI + ADP + DNA – Cryo EM<br />
**[[6g0l]] – XlH3 + H4 + H2A + H2B + CHD1 + DNA – Cryo EM<br />
*Other nucleosome core + DNA
**[[1u35]] - mH3.1 + H2A + H2B + His2A macro domain + DNA – mouse<BR />
**[[5xm1]], [[5xm0]] – mH3 + H4 + H2A + H2B + DNA <br />
**[[1f66]] - XlH3 + mH4 + hH2A + XlH2B + DNA<BR />
**[[5b1m]], [[5b1l]] - mH3 + H4 + H2A + H2B + DNA<br />
**[[2aro]], [[1tzy]], [[1hq3]], [[2hio]], [[1hio]] - cH3 + H4 + H2A + H2B<br />
**[[1eqz]] - cH3 + H4 + H2A + H2B + DNA<BR />
**[[2pyo]], [[2nqb]], [[3nqb]] - DmH3 + H4 + H2A + H2B + DNA <BR />
**[[5wcu]] - DmH3 + H4 + H2A + H2B + H5 + DNA<br />
**[[4x23]] - DmH3 + H4 + H2A + H2B + centromeric protein C + DNA<br />
**[[6dzt]] - DmH3 + H4 + H2A + H2B + antibody + DNA<br />
**[[6j51]], [[6j50]], [[6j4z]], [[6j4y]], [[6j4x]], [[6j4w]], [[6inq]], [[6i84]], [[6a5u]], [[6a5t]], [[6a5r]], [[6a5p]], [[6a5o]], [[6a5l]] – yH3.3 + H4 + H2A + H2B + RNA polymerase + RNA + DNA – Cryo EM<br />
**[[6ir9]] – yH3.3 + H4 + H2A + H2B + RNA polymerase + SPT4 + SPT5 + RNA + DNA – Cryo EM<br />
**[[6gen]], [[6gej]] – yH3 + H4 + H2A + H2B + SWI1 + actin-like protein + vacuolar protein sorting-associated + RNA + DNA – Cryo EM<br />
**[[1id3]] - yH3 + H4 + H2A + H2B + DNA<BR />
**[[4jjn]], [[4kud]] - yH3 + H4 + H2A.2 + H2B.2 + SIR3 + DNA<br />
**[[5zbb]], [[5zba]] - yH3 + H4 + RTT109 + ASF1<br />
**[[5z3v]], [[5z3u]], [[5z3t]], [[5z3o]], [[5z3l]] - yH3.2 + H4 + H2A + H2B + SNF2 + ADP + DNA – Cryo EM<br />
2aro, 1tzy, 1hq3, 2hio, 1hio - cH3 + H4 + H2A + H2B
**[[6fml]] – H3.2 + H4 + H2A + H2B + RuvB + actin-related protein + IES6 + DNA – ''Chaetomium thermophilum'' - Cryo EM<br />
}}
== References ==
== References ==
<references/>
<references/>


[[Category:Topic Page]]
[[Category:Topic Page]]

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Ann Taylor, Karsten Theis