Gyrase: Difference between revisions
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== Structural highlights == | == Structural highlights == | ||
<scene name='41/410321/Cv/5'>Gyrase subunit A N-terminal and subunit B C-terminal complex with DNA and inhibitor</scene>. A <scene name='41/410321/Cv/6'>potential drug interacts with both DNA strands and in the hydrophobic pocket between subunits A and B</scene><ref>PMID:24900889</ref>. Water molecules shown as red spheres. | <scene name='41/410321/Cv/5'>Gyrase subunit A N-terminal and subunit B C-terminal complex with DNA and inhibitor</scene>. A <scene name='41/410321/Cv/6'>potential drug interacts with both DNA strands and in the hydrophobic pocket between subunits A and B</scene><ref>PMID:24900889</ref>. Water molecules shown as red spheres. | ||
==3D Structure of Gyrase== | |||
[[Gyrase 3D Structures]] | |||
</StructureSection> | </StructureSection> | ||
==3D Structure of Gyrase== | ==3D Structure of Gyrase== | ||
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**[[4ely]] – GyrA residues 363-497 + CcdB – ''Shigella flexneri''<br /> | **[[4ely]] – GyrA residues 363-497 + CcdB – ''Shigella flexneri''<br /> | ||
**[[4ddq]] – GyrA – ''Bacillus subtilis''<br /> | **[[4ddq]] – GyrA – ''Bacillus subtilis''<br /> | ||
**[[6n1r]], [[6n1q]] – SpGyrA N-terminal – ''Streptococcus pneumoniae'' – Cryo EM<br /> | |||
**[[6n1p]] – SpGyrA N-terminal + DNA – Cryo EM<br /> | |||
**[[5ztj]] - SeGyrA C-terminal – ''Salmonella enterica''<br /> | |||
*Gyrase Subunit B | *Gyrase Subunit B | ||
**[[3g75]], [[3g7b]], [[3g7e]], [[3ttz]], [[3u2d]], [[3u2k]], [[4p8o]], [[5cph]], [[5ctu]], [[5ctw]], [[5ctx]], [[5cty]] – GyrB | **[[3g75]], [[3g7b]], [[3g7e]], [[3ttz]], [[3u2d]], [[3u2k]], [[4p8o]], [[5cph]], [[5ctu]], [[5ctw]], [[5ctx]], [[5cty]] – GyrB N-terminal residues 2-234 + inhibitor – ''Staphylococcus aureus''<br /> | ||
**[[5d6p]], [[5d6q]], [[5d7c]], [[5d7d]], [[5d7r]] - SaGyrB | **[[5d6p]], [[5d6q]], [[5d7c]], [[5d7d]], [[5d7r]] - SaGyrB N-terminal + ligand<br /> | ||
**[[5npk]], [[5npp]] - SaGyrB residues 410-1491 + DNA<br /> | **[[5npk]], [[5npp]] - SaGyrB residues 410-1491 + DNA<br /> | ||
**[[5mmn]], [[5mmo]], [[5mmp]] - EcGyrB | **[[5mmn]], [[5mmo]], [[5mmp]] - EcGyrB N-terminal + antibacterial<br /> | ||
**[[4urm]], [[4uro]] - SaGyrB N-terminal + antibiotic<br /> | **[[4urm]], [[4uro]] - SaGyrB N-terminal + antibiotic<br /> | ||
**[[ | **[[5zxm]] - SeGyrB N-terminal (mutant) <br /> | ||
**[[3cwv]] – GyrB truncated – ''Myxococcus xanthus''<br /> | **[[3cwv]] – GyrB truncated – ''Myxococcus xanthus''<br /> | ||
**[[4wub]], [[4wuc]], [[4wud]], [[4xtj]] - EcGyrB N-terminal<br /> | **[[4wub]], [[4wuc]], [[4wud]], [[4xtj]] - EcGyrB N-terminal<br /> | ||
**[[1kzn]], [[1ei1]], [[1aj6]] - EcGyrB N-terminal+ antibiotic<br /> | **[[1kzn]], [[1ei1]], [[1aj6]] - EcGyrB N-terminal+ antibiotic<br /> | ||
**[[4duh]], [[4zvi]], [[5l3j]] | **[[4duh]], [[4zvi]], [[5l3j]], [[6f8j]], [[4hyp]], [[6f86]], [[5z9q]], [[5z9p]], [[5z9b]], [[5z9e]], [[5z9f]], [[5z9l]], [[5z9m]], [[5z9n]], [[5z4o]], [[5z4h]] - EcGyrB N-terminal+ inhibitor<br /> | ||
**[[4prv]], [[4prx]], [[4pu9]] - EcGyrB N-terminal+ ADP<br /> | **[[4prv]], [[4prx]], [[4pu9]] - EcGyrB N-terminal+ ADP<br /> | ||
**[[ | **[[5mmn]], [[5mmo]], [[5mmp]] - EcGyrB N-terminal + antibacterial<br /> | ||
**[[1kij]] – | **[[6f96]], [[6f94]] - EcGyrB N-terminal + inhibitor<br /> | ||
**[[4b6c]] - GyrB | **[[1kij]] – TtGyrB N-terminal+ antibiotic – ''Thermus thermophilus''<br /> | ||
**[[6enh]], [[6eng]] - TtGyrB ATPase domain + coumarine derivative<br /> | |||
**[[4b6c]] - GyrB N-terminal – ''Mycobacterium smegmatis''<br /> | |||
**[[4gee]], [[4gfn]], [[4ggl]], [[4hxw]], [[4k4o]], [[4kfg]], [[4ksg]], [[4ksh]], [[4ktn]] – GyrB + inhibitor – ''Enterococcus faecalis''<br /> | **[[4gee]], [[4gfn]], [[4ggl]], [[4hxw]], [[4k4o]], [[4kfg]], [[4ksg]], [[4ksh]], [[4ktn]] – GyrB + inhibitor – ''Enterococcus faecalis''<br /> | ||
**[[3zkb]], [[3zkd]] - MtGyrB | **[[2zjt]], [[3ig0]], [[3m4i]] - MtGyrB C-terminal<br /> | ||
**[[3zm7]] - MtGyrB | **[[3zkb]], [[3zkd]] - MtGyrB N-terminal + AMPPNP<br /> | ||
**[[4bae]] - MtGyrB | **[[3zm7]] - MtGyrB N-terminal + AMPPCP<br /> | ||
**[[4bae]] - MtGyrB N-terminal (mutant) + inhibitor<br /> | |||
*Gyrase Subunit A+Subunit B | *Gyrase Subunit A+Subunit B | ||
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**[[2xct]] - SaGyrB C-terminal/SaGyrA N-terminal (mutant) +DNA+ antibiotic<br /> | **[[2xct]] - SaGyrB C-terminal/SaGyrA N-terminal (mutant) +DNA+ antibiotic<br /> | ||
**[[4tma]] - SaGyrB C-terminal- + SaGyrA N-terminal + Gyr inhibitor YACG<br /> | **[[4tma]] - SaGyrB C-terminal- + SaGyrA N-terminal + Gyr inhibitor YACG<br /> | ||
**[[5cdn]], [[5cdo]], [[5cdp]], [[6fqv]] – SaGyrA + SaGyrB + DNA<br /> | **[[5cdn]], [[5cdo]], [[5cdp]], [[6fqv]] – SaGyrA + SaGyrB + DNA<br /> | ||
**[[6qx2]], [[6qx1]], [[6qtp]], [[6qtk]] – SaGyrA + SaGyrB + DNA + inhibitor<br /> | |||
**[[5cdq]], [[6fqm]], [[6fqs]] - SaGyrB + GyrA + DNA + antibiotic<br /> | **[[5cdq]], [[6fqm]], [[6fqs]] - SaGyrB + GyrA + DNA + antibiotic<br /> | ||
**[[5bs3]], [[5iwi]], [[5iwm]] - SaGyrB + GyrA + DNA + inhibitor<br /> | |||
**[[6fm4]] - SaGyrB (mutant) + GyrA + DNA + inhibitor<br /> | |||
**[[5cdm]] – SaGyrA + SaGyrB (mutant) + DNA<br /> | **[[5cdm]] – SaGyrA + SaGyrB (mutant) + DNA<br /> | ||
**[[5cdr]] – SaGyrA (mutant) + SaGyrB (mutant) + DNA<br /> | **[[5cdr]] – SaGyrA (mutant) + SaGyrB (mutant) + DNA<br /> | ||
**[[4z2c]], [[4z2d]] - SpGyrB + GyrA + DNA – ''Streptococcus pneumoniae''<br /> | **[[4z2c]], [[4z2d]] - SpGyrB + GyrA + DNA – ''Streptococcus pneumoniae''<br /> | ||
**[[4z2e]] - SpGyrB + GyrA + DNA + antibiotic<br /> | **[[4z2e]] - SpGyrB + GyrA + DNA + antibiotic<br /> | ||
**[[ | **[[6gav]], [[6gau]] - MtGyrB + GyrA <br /> | ||
**[[5bs8]], [[5bta]], [[5btd]], [[5btg]], [[5btl]] - MtGyrB + GyrA + DNA + antibiotic<br /> | **[[5bs8]], [[5bta]], [[5btd]], [[5btg]], [[5btl]] - MtGyrB + GyrA + DNA + antibiotic<br /> | ||
**[[5btc]], [[5btf]], [[5bti]], [[5btn]] - MtGyrB + GyrA (mutant) + DNA + antibiotic<br /> | **[[5btc]], [[5btf]], [[5bti]], [[5btn]] - MtGyrB + GyrA (mutant) + DNA + antibiotic<br /> | ||
**[[3nuh]] – EcGyrA+EcGyrB<br /> | |||
*Reverse Gyrase | *Reverse Gyrase |