Structure superposition tools: Difference between revisions
Eric Martz (talk | contribs) |
Ronald Ayoub (talk | contribs) Added a new protein structure search tool - RUPEE |
||
| Line 167: | Line 167: | ||
:This server came to my attention after this article was written. I hope to evaluate it in the future -- or someone else is encouraged to do so. [[User:Eric Martz|Eric Martz]] 00:30, 7 July 2011 (IDT) | :This server came to my attention after this article was written. I hope to evaluate it in the future -- or someone else is encouraged to do so. [[User:Eric Martz|Eric Martz]] 00:30, 7 July 2011 (IDT) | ||
===RUPEE=== | |||
*Server: [https://ayoubresearch.com RUPEE] | |||
*Publication (2019)<ref name="rupee">PMID: 30875409</ref> | |||
*Help on server: YES. | |||
*Structure neighbors (pre-calculated): NO. | |||
*Does alignment involve sequence comparison? NO. | |||
*Rigid alignment: YES. | |||
*Flexible alignment: NO. | |||
*Multiple alignment: NO. | |||
*Structure-based sequence alignment: YES | |||
*Search with uploaded models: YES | |||
*Visualization: 3Dmol.js | |||
*Color by deviation: NO. | |||
*Special features: | |||
**Purely geometric structure search with no dependence on sequence. | |||
**For each result, provides a 3d structure alignment, a sequence alignment, and a downloadable PDB alignment file. | |||
**Provide results even for uploaded PDB files with very low resemblance to existing structures. Therefore, is suitable for testing the output of protein structure prediction algorithms. | |||
===SuperPose=== | ===SuperPose=== | ||