4yuo: Difference between revisions
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==High-resolution multiconformer synchrotron model of CypA at 273 K== | ==High-resolution multiconformer synchrotron model of CypA at 273 K== | ||
<StructureSection load='4yuo' size='340' side='right' caption='[[4yuo]], [[Resolution|resolution]] 1.20Å' scene=''> | <StructureSection load='4yuo' size='340' side='right'caption='[[4yuo]], [[Resolution|resolution]] 1.20Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4yuo]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YUO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YUO FirstGlance]. <br> | <table><tr><td colspan='2'>[[4yuo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YUO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YUO FirstGlance]. <br> | ||
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4yug|4yug]], [[4yuh|4yuh]], [[4yui|4yui]], [[4yuj|4yuj]], [[4yuk|4yuk]], [[4yul|4yul]], [[4yum|4yum]], [[4yun|4yun]], [[4yup|4yup]]</td></tr> | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4yug|4yug]], [[4yuh|4yuh]], [[4yui|4yui]], [[4yuj|4yuj]], [[4yuk|4yuk]], [[4yul|4yul]], [[4yum|4yum]], [[4yun|4yun]], [[4yup|4yup]]</td></tr> | ||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PPIA, CYPA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | |||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidylprolyl_isomerase Peptidylprolyl isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidylprolyl_isomerase Peptidylprolyl isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8] </span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yuo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yuo OCA], [http://pdbe.org/4yuo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yuo RCSB], [http://www.ebi.ac.uk/pdbsum/4yuo PDBsum]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yuo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yuo OCA], [http://pdbe.org/4yuo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yuo RCSB], [http://www.ebi.ac.uk/pdbsum/4yuo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yuo ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
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</div> | </div> | ||
<div class="pdbe-citations 4yuo" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 4yuo" style="background-color:#fffaf0;"></div> | ||
==See Also== | |||
*[[Cyclophilin 3D structures|Cyclophilin 3D structures]] | |||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Human]] | |||
[[Category: Large Structures]] | |||
[[Category: Peptidylprolyl isomerase]] | [[Category: Peptidylprolyl isomerase]] | ||
[[Category: Baxter, E L]] | [[Category: Baxter, E L]] | ||
Revision as of 10:09, 12 June 2019
High-resolution multiconformer synchrotron model of CypA at 273 KHigh-resolution multiconformer synchrotron model of CypA at 273 K
Structural highlights
Function[PPIA_HUMAN] PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Publication Abstract from PubMedDetermining the interconverting conformations of dynamic proteins in atomic detail is a major challenge for structural biology. Conformational heterogeneity in the active site of the dynamic enzyme cyclophilin A (CypA) has been previously linked to its catalytic function, but the extent to which the different conformations of these residues are correlated is unclear. We monitored the temperature dependences of these alternative conformations with eight synchrotron datasets spanning 100-310 K. Multiconformer models show that many alternative conformations in CypA are populated only at 240 K and above, yet others remain populated or become populated at 180 K and below. These results point to a complex evolution of conformational heterogeneity between 180-240 K that involves both thermal deactivation and solvent-driven arrest of protein motions in the crystal. Together, our multitemperature analyses and XFEL data motivate a new generation of temperature- and time-resolved experiments to structurally characterize the dynamic underpinnings of protein function. .,Keedy DA, Kenner LR, Warkentin M, Woldeyes RA, Hopkins JB, Thompson MC, Brewster AS, Van Benschoten AH, Baxter EL, Uervirojnangkoorn M, McPhillips SE, Song J, Alonso-Mori R, Holton JM, Weis WI, Brunger AT, Soltis SM, Lemke H, Gonzalez A, Sauter NK, Cohen AE, van den Bedem H, Thorne RE, Fraser JS Elife. 2015 Sep 30;4. doi: 10.7554/eLife.07574. PMID:26422513[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)
OCA- Human
- Large Structures
- Peptidylprolyl isomerase
- Baxter, E L
- Bedem, H van den
- Benschoten, A H.Van
- Brewster, A S
- Brunger, A T
- Cohen, A E
- Fraser, J S
- Gonzalez, A
- Holton, J M
- Hopkins, J B
- Keedy, D A
- Kenner, L R
- Lemke, H
- McPhillips, S E
- Mori, R A
- Sauter, N K
- Soltis, M
- Song, J
- Thompson, M C
- Thorne, R E
- Uervirojnangkoorn, M
- Warkentin, M
- Weis, W I
- Woldeyes, R A
- Cyclophilin
- Isomerase