6hgj: Difference between revisions

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-'''Unreleased structure'''
-The entry 6hgj is ON HOLD  until Paper Publication
+==Crystal structure of Alpha1-antichymotrypsin variant NewBG-III: a new binding globulin in complex with aldosterone==
+<StructureSection load='6hgj' size='340' side='right'caption='[[6hgj]], [[Resolution|resolution]] 1.82&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6hgj]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HGJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6HGJ FirstGlance]. <br>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AS4:ALDOSTERONE'>AS4</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6hgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6hgj OCA], [http://pdbe.org/6hgj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6hgj RCSB], [http://www.ebi.ac.uk/pdbsum/6hgj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6hgj ProSAT]</span></td></tr>
+</table>
+== Function ==
+[[http://www.uniprot.org/uniprot/AACT_HUMAN AACT_HUMAN]] Although its physiological function is unclear, it can inhibit neutrophil cathepsin G and mast cell chymase, both of which can convert angiotensin-1 to the active angiotensin-2.<ref>PMID:2404007</ref>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The introduction of ligand-binding sites into proteins and the engineering of molecular allosteric coupling pathways are topical issues in protein design. Here, we show that these issues can be addressed concurrently, using the serpin human alpha1-antichymotrypsin (ACT) as a model. We have introduced up to 15 amino acid substitutions into ACT, converting it into a surrogate corticosteroid-binding globulin (CBG), thereby creating a new binding globulin (NewBG). Human CBG and ACT share 46% sequence identity, and CBG served as the blue-print for our design, which was guided by side-chain-packing calculations, ITC measurements and crystal structure determinations. Upon transfer of ligand-interacting residues from CBG to ACT and mutation of specific second shell residues, a NewBG variant was obtained, which binds cortisol with 1.5microM affinity. This novel serpin (NewBG-III) binds cortisol with a 33-fold lower affinity than CBG, but shares a similar ligand-binding profile and binding mode when probed with different steroid ligands and site-directed mutagenesis. An additional substitution, i.e. A349R, created NewBG-III-allo, which introduced an allosteric coupling between ligand binding and the serpin-like S-to-R transition in ACT. In NewBG-III-allo, the proteinase-triggered S-to-R transition leads to a greater than 200-fold reduction in ligand affinity, and crystal structures suggest that this is mediated by the L55V and A349R substitutions. This reduction significantly exceeds the 10-fold reduction in binding affinity observed in human CBG.
-Authors: Schmidt, K., Muller, Y.A.
+NewBG: A surrogate corticosteroid-binding globulin with an unprecedentedly high ligand release efficacy.,Gardill BR, Schmidt K, Muller YA J Struct Biol. 2019 May 16. pii: S1047-8477(19)30110-8. doi:, 10.1016/j.jsb.2019.05.006. PMID:31103428<ref>PMID:31103428</ref>
-Description: Crystal structure of Alpha1-antichymotrypsin variant NewBG-III: a new binding globulin in complex with aldosterone
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
-[[Category: Muller, Y.A]]
+<div class="pdbe-citations 6hgj" style="background-color:#fffaf0;"></div>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Muller, Y A]]
 [[Category: Schmidt, K]]
+[[Category: Alpha1-antichymotrypsin]]
+[[Category: Computational protein design]]
+[[Category: Serpin]]
+[[Category: Transport protein]]