6ilj: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
Line 1: Line 1:
'''Unreleased structure'''


The entry 6ilj is ON HOLD until Paper Publication
==Cryo-EM structure of Echovirus 6 complexed with its attachment receptor CD55 at PH 5.5==
 
<StructureSection load='6ilj' size='340' side='right'caption='[[6ilj]], [[Resolution|resolution]] 3.60&Aring;' scene=''>
Authors:  
== Structural highlights ==
 
<table><tr><td colspan='2'>[[6ilj]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Echovirus_e6 Echovirus e6] and [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ILJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ILJ FirstGlance]. <br>
Description:  
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SPH:SPHINGOSINE'>SPH</scene></td></tr>
[[Category: Unreleased Structures]]
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CD55, CR, DAF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ilj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ilj OCA], [http://pdbe.org/6ilj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ilj RCSB], [http://www.ebi.ac.uk/pdbsum/6ilj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ilj ProSAT]</span></td></tr>
</table>
== Function ==
[[http://www.uniprot.org/uniprot/DAF_HUMAN DAF_HUMAN]] This protein recognizes C4b and C3b fragments that condense with cell-surface hydroxyl or amino groups when nascent C4b and C3b are locally generated during C4 and c3 activation. Interaction of daf with cell-associated C4b and C3b polypeptides interferes with their ability to catalyze the conversion of C2 and factor B to enzymatically active C2a and Bb and thereby prevents the formation of C4b2a and C3bBb, the amplification convertases of the complement cascade.<ref>PMID:7525274</ref>  
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Echovirus e6]]
[[Category: Human]]
[[Category: Large Structures]]
[[Category: Gao, G F]]
[[Category: Liu, S]]
[[Category: Peng, R]]
[[Category: Zhao, X]]
[[Category: Cd55]]
[[Category: Cryo-em]]
[[Category: Echovirus 6]]
[[Category: Virus]]
[[Category: Virus-receptor complex]]

Revision as of 10:27, 21 May 2019

Cryo-EM structure of Echovirus 6 complexed with its attachment receptor CD55 at PH 5.5Cryo-EM structure of Echovirus 6 complexed with its attachment receptor CD55 at PH 5.5

Structural highlights

6ilj is a 5 chain structure with sequence from Echovirus e6 and Human. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Gene:CD55, CR, DAF (HUMAN)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[DAF_HUMAN] This protein recognizes C4b and C3b fragments that condense with cell-surface hydroxyl or amino groups when nascent C4b and C3b are locally generated during C4 and c3 activation. Interaction of daf with cell-associated C4b and C3b polypeptides interferes with their ability to catalyze the conversion of C2 and factor B to enzymatically active C2a and Bb and thereby prevents the formation of C4b2a and C3bBb, the amplification convertases of the complement cascade.[1]

References

  1. Ward T, Pipkin PA, Clarkson NA, Stone DM, Minor PD, Almond JW. Decay-accelerating factor CD55 is identified as the receptor for echovirus 7 using CELICS, a rapid immuno-focal cloning method. EMBO J. 1994 Nov 1;13(21):5070-4. PMID:7525274

6ilj, resolution 3.60Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA