4tmw: Difference between revisions
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==Translation initiation factor eIF5B (517-858) from C. thermophilum, bound to GTP and Sodium== | ==Translation initiation factor eIF5B (517-858) from C. thermophilum, bound to GTP and Sodium== | ||
<StructureSection load='4tmw' size='340' side='right' caption='[[4tmw]], [[Resolution|resolution]] 1.55Å' scene=''> | <StructureSection load='4tmw' size='340' side='right'caption='[[4tmw]], [[Resolution|resolution]] 1.55Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4tmw]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TMW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4TMW FirstGlance]. <br> | <table><tr><td colspan='2'>[[4tmw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Cbs_144.50 Cbs 144.50]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TMW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4TMW FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4tmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tmw OCA], [http://pdbe.org/4tmw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4tmw RCSB], [http://www.ebi.ac.uk/pdbsum/4tmw PDBsum]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4tmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tmw OCA], [http://pdbe.org/4tmw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4tmw RCSB], [http://www.ebi.ac.uk/pdbsum/4tmw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4tmw ProSAT]</span></td></tr> | ||
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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</div> | </div> | ||
<div class="pdbe-citations 4tmw" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 4tmw" style="background-color:#fffaf0;"></div> | ||
==See Also== | |||
*[[Eukaryotic initiation factor|Eukaryotic initiation factor]] | |||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Cbs 144 50]] | |||
[[Category: Large Structures]] | |||
[[Category: Ficner, R]] | [[Category: Ficner, R]] | ||
[[Category: Kuhle, B]] | [[Category: Kuhle, B]] | ||
Revision as of 18:00, 10 May 2019
Translation initiation factor eIF5B (517-858) from C. thermophilum, bound to GTP and SodiumTranslation initiation factor eIF5B (517-858) from C. thermophilum, bound to GTP and Sodium
Structural highlights
Publication Abstract from PubMedTranslational GTPases are universally conserved GTP hydrolyzing enzymes, critical for fidelity and speed of ribosomal protein biosynthesis. Despite their central roles, the mechanisms of GTP-dependent conformational switching and GTP hydrolysis that govern the function of trGTPases remain poorly understood. Here, we provide biochemical and high-resolution structural evidence that eIF5B and aEF1A/EF-Tu bound to GTP or GTPgammaS coordinate a monovalent cation (M+) in their active site. Our data reveal that M+ ions form constitutive components of the catalytic machinery in trGTPases acting as structural cofactor to stabilize the GTP-bound "on" state. Additionally, the M+ ion provides a positive charge into the active site analogous to the arginine-finger in the Ras-RasGAP system indicating a similar role as catalytic element that stabilizes the transition state of the hydrolysis reaction. In sequence and structure, the coordination shell for the M+ ion is, with exception of eIF2gamma, highly conserved among trGTPases from bacteria to human. We therefore propose a universal mechanism of M+-dependent conformational switching and GTP hydrolysis among trGTPases with important consequences for the interpretation of available biochemical and structural data. A monovalent cation acts as structural and catalytic cofactor in translational GTPases.,Kuhle B, Ficner R EMBO J. 2014 Sep 15. pii: e201488517. PMID:25225612[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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