4tum: Difference between revisions
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
==Crystal structure of Ankyrin Repeat Domain of AKR2== | ==Crystal structure of Ankyrin Repeat Domain of AKR2== | ||
<StructureSection load='4tum' size='340' side='right' caption='[[4tum]], [[Resolution|resolution]] 2.30Å' scene=''> | <StructureSection load='4tum' size='340' side='right'caption='[[4tum]], [[Resolution|resolution]] 2.30Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4tum]] is a 5 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TUM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4TUM FirstGlance]. <br> | <table><tr><td colspan='2'>[[4tum]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4TUM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4TUM FirstGlance]. <br> | ||
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4tum FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tum OCA], [http://pdbe.org/4tum PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4tum RCSB], [http://www.ebi.ac.uk/pdbsum/4tum PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4tum ProSAT]</span></td></tr> | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AKR2, AFT, At4g35450, F15J1.20 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4tum FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4tum OCA], [http://pdbe.org/4tum PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4tum RCSB], [http://www.ebi.ac.uk/pdbsum/4tum PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4tum ProSAT]</span></td></tr> | |||
</table> | </table> | ||
== Function == | == Function == | ||
| Line 17: | Line 18: | ||
</div> | </div> | ||
<div class="pdbe-citations 4tum" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 4tum" style="background-color:#fffaf0;"></div> | ||
==See Also== | |||
*[[Ankyrin 3D structures|Ankyrin 3D structures]] | |||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Arath]] | |||
[[Category: Large Structures]] | |||
[[Category: Cho, Y]] | [[Category: Cho, Y]] | ||
[[Category: Gwon, G H]] | [[Category: Gwon, G H]] | ||
[[Category: Protein binding]] | [[Category: Protein binding]] | ||
Revision as of 17:46, 10 May 2019
Crystal structure of Ankyrin Repeat Domain of AKR2Crystal structure of Ankyrin Repeat Domain of AKR2
Structural highlights
Function[AKR2_ARATH] Seems to be involved in the regulation of hydrogen peroxide levels during biotic and abiotic stresses by optimizing the ascorbate peroxidase 3 (APX3) hydrogen peroxide-degrading activity. This regulation might be monitored by GRF6. Publication Abstract from PubMedIn organellogenesis of the chloroplast from endosymbiotic cyanobacteria, the establishment of protein-targeting mechanisms to the chloroplast should have been pivotal. However, it is still mysterious how these mechanisms were established and how they work in plant cells. Here we show that AKR2A, the cytosolic targeting factor for chloroplast outer membrane (COM) proteins, evolved from the ankyrin repeat domain (ARD) of the host cell by stepwise extensions of its N-terminal domain and that two lipids, monogalactosyldiacylglycerol (MGDG) and phosphatidylglycerol (PG), of the endosymbiont were selected to function as the AKR2A receptor. Structural analysis, molecular modeling, and mutational analysis of the ARD identified two adjacent sites for coincidental and synergistic binding of MGDG and PG. Based on these findings, we propose that the targeting mechanism of COM proteins was established using components from both the endosymbiont and host cell through a modification of the protein-protein-interacting ARD into a lipid binding domain. An Ankyrin Repeat Domain of AKR2 Drives Chloroplast Targeting through Coincident Binding of Two Chloroplast Lipids.,Kim DH, Park MJ, Gwon GH, Silkov A, Xu ZY, Yang EC, Song S, Song K, Kim Y, Yoon HS, Honig B, Cho W, Cho Y, Hwang I Dev Cell. 2014 Sep 8;30(5):598-609. doi: 10.1016/j.devcel.2014.07.026. PMID:25203210[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
|
| ||||||||||||||||