Adhesin: Difference between revisions

Michal Harel (talk | contribs)
No edit summary
Michal Harel (talk | contribs)
No edit summary
Line 19: Line 19:


</StructureSection>
</StructureSection>
== 3D Structures of adhesin ==
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|
*Fimbrial adhesin
**[[4k0o]], [[2bs8]], [[2bsc]], [[2bsb]], [[5nwp]] – EcF17b-G lectin domain – ''Escherichia coli''  <BR />
**[[1o9z]], [[1o9w]], [[1o9v]] – EcF17a-G lectin domain  <BR />
**[[5vq5]] – EcF17 lectin domain (mutant) <BR />
**[[1oio]] – EcF17c lectin domain <BR />
**[[4b4p]], [[4bwo]] – EcF18 lectin domain  <BR />
**[[4auu]], [[1uwf]], [[1tr7]], [[5fwr]] – EcAdh  FimH lectin domain <BR />
**[[5mca]], [[5fx3]], [[5fs5]] – EcAdh  FimH lectin domain (mutant)  <BR />
**[[5afo]] – EcAdh  LF82  <BR />
**[[6aow]] – EcAdh FMLH lectin domain <BR />
**[[3zk7]] – SpPsaA - ''Streptococcus pneumoniae'' <br />
**[[3zk8]], [[3zk9]], [[3zka]] – SpPsaA (mutant)<br />
**[[3u4k]] – Adh lectin domain – ''Klebsiella pneumoniae''<BR />
**[[6h1q]] – Adh – ''Proteus mirabilis'' <br />
*Fimbrial adhesion complexes
**[[4b4q]], [[4b4r]] – EcF18 lectin domain + hexasaccharide  <BR />
**[[4w6w]], [[4w6x]], [[4w6y]] – EcF18 lectin domain  + nanobody <BR />
**[[4j3o]] – EcAdh FimH + FimG + FimC + FimF + FimD <BR />
**[[6e14]], [[6e15]] – EcAdh FimH + FimG + FimC + FimF + FimD  - Cryo EM<BR />
**[[3rfz]], [[1ze3]] – EcAdh FimH + FimC + FimD <BR />
**[[1qun]], [[1klf]], [[1kiu]] – EcAdh FimH + FimC <BR />
**[[4xo9]] – EcAdh FimH + DSG residues 24-37 <BR />
**[[4xod]], [[4xoa]] – EcAdh FimH + FimG residues 24-37 <BR />
**[[4xob]] – EcAdh FimH + FimF residues 24-37 + mannoside derivative<BR />
**[[5jr4]], [[5jqi]] – EcAdh FimH (mutant) + FimG N-terminal <BR />
**[[6as8]], [[6arm]], [[6aoy]] – EcAdh FMLD lectin domain + galactoside derivative <BR />
**[[6aox]] – EcAdh FMLD lectin domain + TF antigen <BR />
**[[6aro]] – EcAdh FMLH lectin domain + quinoline derivative <BR />
**[[5muc]], [[5l4y]], [[5l4x]], [[5l4w]], [[5l4v]], [[5l4u]], [[5l4t]], [[5jcq]], [[5jcr]], [[5f2f]], [[5f3f]], [[5abz]], [[4xo8]], [[4x5p]], [[4x5q]], [[4x5r]], [[4lov]], [[4css]], [[4cst]], [[4att]], [[4auj]], [[4auy]], [[4av0]], [[4av4]], [[4av5]], [[4avh]], [[4avi]], [[4avj]], [[4avk]], [[3zl1]], [[3zl2]], [[2vco]], [[6gtx]], [[6gty]] – EcAdh FimH lectin domain + mannoside derivative <BR />
**[[5cgb]] – EcAdh FimH lectin domain + galactitol <BR />
**[[5ab1]], [[4x50]] – EcAdh FimH + mannoside derivative <BR />
**[[5aap]], [[5aal]], [[5mts]] – EcAdh  FimH lectin domain + anti-adhesive <BR />
**[[3f6j]], [[3f64]], [[1zpl]], [[1zk5]]  – EcF17a-G lectin domain + GlcNAc derivative <BR />
**[[1psz]] – SpPsaA + Zn – ''Streptococcus pneumonia''<br />
**[[3ztt]] – SpPsaA + Mn<br />
**[[4utp]], [[4uto]] – SpPsaA + Cd<br />
**[[2bs7]] – EcF17b-G lectin domain + chitobiose  <BR />
**[[3ffo]] – EcF17b-G lectin domain + GlcNac-Man  <BR />
**[[4b4q]], [[4b4r]] – EcFedF lectin domain + hexasaccharide  <BR />
**[[4w6w]], [[4w6x]], [[4w6y]] – EcFedF lectin domain  + nanobody <BR />
**[[4f8l]] – YpPsaA + galactose + inhibitor – ''Yersinia pestis'' <BR />
**[[4f8n]] – YpPsaA + galactose + phosphate choline <BR />
**[[4f8o]] – YpPsaA + lactose + inhibitor  <BR />
**[[4f8p]] – YpPsaA + galactose  <BR />
*Epitheial adhesin
**[[4d3w]], [[4asl]], [[4af9]] – CgAdh epithelial 1 A domain – ''Candida glabrata''<br />
**[[4afc]], [[4afb]], [[4afa]] – CgAdh epithelial 1 A domain (mutant)<br />
**[[4cp2]], [[4cp1]], [[4cp0]] – CgAdh epithelial 9 A domain <br />
**[[4coz]], [[4coy]], [[4cow]], [[4cov]], [[4cou]] – CgAdh epithelial 6 A domain <br />
*Collagen adhesin (CAdh)
**[[1amx]] – SaCAdh CBD – ''Staphylococcus aureus''<br />
**[[1d2o]] – SaCAdh B1 repeat unit<br />
**[[1d2p]] – SaCAdh B1-B2 repeat units<br />
**[[2f68]] – SaCAdh extracellular domain<br />
**[[2f6a]] – SaCAdh extracellular domain + collagen<br />
**[[2okm]], [[2z1p]] – CAdh CBD – ''Enterococcus faecalis''<br />
**[[1p9h]] – YeYadA CBD – ''Yersinia enterocolitica''<br />
**[[3h7x]] – YeYadA stalk domain<br />
**[[3h7z]] – YeYadA stalk domain (mutant)<br />
**[[3lt6]], [[3lt7]] – YeYadA coiled coil<br />
**[[2lme]] – YeYadA coiled coil - NMR<br />
*Serine-rich adhesin for platelets (SRAP)
**[[4m00]] – SaSRAP LBD<br />
**[[4m01]] – SaSRAP LBD N-terminal<br />
**[[4m02]] – SaSRAP LBD middle region<br />
**[[4m03]] – SaSRAP LBD C-terminal<br />
*Adhesin
**[[2odl]], [[2gr8]], [[2gr7]] – HiAdh secretion domain – ''Haemophilus influenzae''<br />
**[[3emf]] – HiAdh residues 51-166<br />
**[[3emi]] – HiAdh residues 307-422 (mutant)<br />
**[[1s7m]] – HiAdh residues 548-706<br />
**[[3emo]] – HiAdh residues 937-1098<br />
**[[4zh7]], [[4zh0]] – Adh BABA – ''Helicobacter pylori''<br />
**[[4usx]] – Adh trimeric autotransporter – ''Burkholderia pseudomallei''<br />
**[[3wqa]], [[3wpr]], [[3wpp]], [[3wpo]], [[3wpa]] – AcAdh trimeric autotransporter C-terminal – ''Acinetobacter''<br />
**[[3wp8]] – AcAdh trimeric autotransporter C-terminal (mutant)<br />
**[[4err]] – Adh autotransporter effector domain – ''Vibrio vulnificus''<br />
**[[2wps]], [[2wpr]], [[2wpq]] – Adh trimeric autotransporter residues 483-523 – ''Salmonella enterica''<br />
**[[4tsh]] – Adh surface protein – ''Streptococcus mutans''<br />
**[[4mee]] – EcAdh diffuse adherence C-terminal <br />
**[[5lvy]] – EcAdh lectin domain  <BR />
**[[3etw]] – FnAdh  A – ''Fusobacterium nucleatum'' <BR />
**[[3etz]], [[3ety]], [[3etx]], [[2gl2]] – FnAdh  A (mutant)  <BR />
**[[3d9x]] – Adh  A – ''Bartonella henselae'' <BR />
**[[2lwb]] – Adh  WI-1 – ''Ajellomyces dermatitidis'' <BR />
**[[5my7]] – NmAdh  residues 1-124 – ''Neisseria meningitidis'' <BR />
**[[6eun]] – NmAdh  residues 24-170<BR />
**[[6eup]] – NmAdh  residues 24-170 (mutant)<BR />
**[[6gq4]] – Adh  residues 83-185 – ''Neisseria gonorheae''<BR />
}}




Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman