5r1r: Difference between revisions
No edit summary |
No edit summary |
||
| Line 5: | Line 5: | ||
|SITE= <scene name='pdbsite=ACA:Active+Site+w.+Glutamate+441+Mutated+To+ALA'>ACA</scene>, <scene name='pdbsite=ACB:Active+Site+w.+Glutamate+441+Mutated+To+ALA'>ACB</scene> and <scene name='pdbsite=ACC:Active+Site+w.+Glutamate+441+Mutated+To+ALA'>ACC</scene> | |SITE= <scene name='pdbsite=ACA:Active+Site+w.+Glutamate+441+Mutated+To+ALA'>ACA</scene>, <scene name='pdbsite=ACB:Active+Site+w.+Glutamate+441+Mutated+To+ALA'>ACB</scene> and <scene name='pdbsite=ACC:Active+Site+w.+Glutamate+441+Mutated+To+ALA'>ACC</scene> | ||
|LIGAND= | |LIGAND= | ||
|ACTIVITY= [http://en.wikipedia.org/wiki/Ribonucleoside-diphosphate_reductase Ribonucleoside-diphosphate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.17.4.1 1.17.4.1] | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonucleoside-diphosphate_reductase Ribonucleoside-diphosphate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.17.4.1 1.17.4.1] </span> | ||
|GENE= NRDA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]) | |GENE= NRDA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]) | ||
|DOMAIN= | |||
|RELATEDENTRY= | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5r1r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5r1r OCA], [http://www.ebi.ac.uk/pdbsum/5r1r PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=5r1r RCSB]</span> | |||
}} | }} | ||
| Line 32: | Line 35: | ||
[[Category: specificity]] | [[Category: specificity]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:42:09 2008'' | ||
Revision as of 05:42, 31 March 2008
| |||||||
| , resolution 3.1Å | |||||||
|---|---|---|---|---|---|---|---|
| Sites: | , and | ||||||
| Gene: | NRDA (Escherichia coli) | ||||||
| Activity: | Ribonucleoside-diphosphate reductase, with EC number 1.17.4.1 | ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
RIBONUCLEOTIDE REDUCTASE E441A MUTANT R1 PROTEIN FROM ESCHERICHIA COLI
OverviewOverview
The invariant active site residue Glu441 in protein R1 of ribonucleotide reductase from Escherichia coli has been engineered to alanine, aspartic acid, and glutamic acid. Each mutant protein was structurally and enzymatically characterized. Glu441 contributes to substrate binding, and a carboxylate side chain at position 441 is essential for catalysis. The most intriguing results are the suicidal mechanism-based reaction intermediates observed when R1 E441Q is incubated with protein R2 and natural substrates (CDP and GDP). In a consecutive reaction sequence, we observe at least three clearly discernible steps: (i) a rapid decay (k1 >/= 1.2 s-1) of the catalytically essential tyrosyl radical of protein R2 concomitant with formation of an early transient radical intermediate species, (ii) a slower decay (k2 = 0.03 s-1) of the early intermediate concomitant with formation of another intermediate with a triplet EPR signal, and (iii) decay (k3 = 0.004 s-1) of the latter concomitant with formation of a characteristic substrate degradation product. The characteristics of the triplet EPR signal are compatible with a substrate radical intermediate (most likely localized at the 3'-position of the ribose moiety of the substrate nucleotide) postulated to occur in the wild type reaction mechanism as well.
About this StructureAbout this Structure
5R1R is a Protein complex structure of sequences from Escherichia coli. Full crystallographic information is available from OCA.
ReferenceReference
A new mechanism-based radical intermediate in a mutant R1 protein affecting the catalytically essential Glu441 in Escherichia coli ribonucleotide reductase., Persson AL, Eriksson M, Katterle B, Potsch S, Sahlin M, Sjoberg BM, J Biol Chem. 1997 Dec 12;272(50):31533-41. PMID:9395490
Page seeded by OCA on Mon Mar 31 05:42:09 2008