3d1l: Difference between revisions

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==Crystal structure of putative NADP oxidoreductase BF3122 from Bacteroides fragilis==
==Crystal structure of putative NADP oxidoreductase BF3122 from Bacteroides fragilis==
<StructureSection load='3d1l' size='340' side='right' caption='[[3d1l]], [[Resolution|resolution]] 2.19&Aring;' scene=''>
<StructureSection load='3d1l' size='340' side='right' caption='[[3d1l]], [[Resolution|resolution]] 2.19&Aring;' scene=''>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BF3122 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272559 BACFN])</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BF3122 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272559 BACFN])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d1l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d1l OCA], [http://pdbe.org/3d1l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3d1l RCSB], [http://www.ebi.ac.uk/pdbsum/3d1l PDBsum], [http://www.topsan.org/Proteins/MCSG/3d1l TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3d1l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d1l OCA], [http://pdbe.org/3d1l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3d1l RCSB], [http://www.ebi.ac.uk/pdbsum/3d1l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3d1l ProSAT], [http://www.topsan.org/Proteins/MCSG/3d1l TOPSAN]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
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Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d1/3d1l_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d1/3d1l_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>

Revision as of 12:46, 14 November 2018

Crystal structure of putative NADP oxidoreductase BF3122 from Bacteroides fragilisCrystal structure of putative NADP oxidoreductase BF3122 from Bacteroides fragilis

Structural highlights

3d1l is a 2 chain structure with sequence from Bacfn. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
NonStd Res:
Gene:BF3122 (BACFN)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3d1l, resolution 2.19Å

Drag the structure with the mouse to rotate

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OCA