3cbw: Difference between revisions

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<StructureSection load='3cbw' size='340' side='right' caption='[[3cbw]], [[Resolution|resolution]] 1.27&Aring;' scene=''>
<StructureSection load='3cbw' size='340' side='right' caption='[[3cbw]], [[Resolution|resolution]] 1.27&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3cbw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CBW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CBW FirstGlance]. <br>
<table><tr><td colspan='2'>[[3cbw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CBW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CBW FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ydhT, BSU05880 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ydhT, BSU05880 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cbw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cbw OCA], [http://pdbe.org/3cbw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cbw RCSB], [http://www.ebi.ac.uk/pdbsum/3cbw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cbw ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3cbw TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cbw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cbw OCA], [http://pdbe.org/3cbw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cbw RCSB], [http://www.ebi.ac.uk/pdbsum/3cbw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cbw ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3cbw TOPSAN]</span></td></tr>
</table>
</table>
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Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cb/3cbw_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cb/3cbw_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacillus globigii migula 1900]]
[[Category: Vibrio subtilis ehrenberg 1835]]
[[Category: Almo, S C]]
[[Category: Almo, S C]]
[[Category: Bain, K T]]
[[Category: Bain, K T]]

Revision as of 11:38, 14 November 2018

Crystal structure of the YdhT protein from Bacillus subtilisCrystal structure of the YdhT protein from Bacillus subtilis

Structural highlights

3cbw is a 2 chain structure with sequence from "vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Gene:ydhT, BSU05880 ("Vibrio subtilis" Ehrenberg 1835)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

[MANB1_BACSU] Seems to be involved in the degradation of glucomannan.[1]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

References

  1. ↑ Sadaie Y, Nakadate H, Fukui R, Yee LM, Asai K. Glucomannan utilization operon of Bacillus subtilis. FEMS Microbiol Lett. 2008 Feb;279(1):103-9. PMID:18177310 doi:http://dx.doi.org/FML1018

3cbw, resolution 1.27Å

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