5yc6: Difference between revisions

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-'''Unreleased structure'''
-The entry 5yc6 is ON HOLD
+==The crystal structure of uPA in complex with 4-Bromobenzylamirne at pH4.6==
+<StructureSection load='5yc6' size='340' side='right' caption='[[5yc6]], [[Resolution|resolution]] 1.18&Aring;' scene=''>
-Authors: Jiang, L.G., Zhang, X., Huang, M.D.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[5yc6]] is a 1 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4jni 4jni]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YC6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YC6 FirstGlance]. <br>
-Description: The crystal structure of uPA in complex with 4-Bromobenzylamirne at pH4.6
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=PZH:1-(4-BROMOPHENYL)METHANAMINE'>PZH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-[[Category: Unreleased Structures]]
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/U-plasminogen_activator U-plasminogen activator], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.73 3.4.21.73] </span></td></tr>
-[[Category: Huang, M.D]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yc6 OCA], [http://pdbe.org/5yc6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yc6 RCSB], [http://www.ebi.ac.uk/pdbsum/5yc6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yc6 ProSAT]</span></td></tr>
-[[Category: Jiang, L.G]]
+</table>
+== Disease ==
+[[http://www.uniprot.org/uniprot/UROK_HUMAN UROK_HUMAN]] Defects in PLAU are the cause of Quebec platelet disorder (QPD) [MIM:[http://omim.org/entry/601709 601709]]. QPD is an autosomal dominant bleeding disorder due to a gain-of-function defect in fibrinolysis. Although affected individuals do not exhibit systemic fibrinolysis, they show delayed onset bleeding after challenge, such as surgery. The hallmark of the disorder is markedly increased PLAU levels within platelets, which causes intraplatelet plasmin generation and secondary degradation of alpha-granule proteins.<ref>PMID:20007542</ref>
+== Function ==
+[[http://www.uniprot.org/uniprot/UROK_HUMAN UROK_HUMAN]] Specifically cleaves the zymogen plasminogen to form the active enzyme plasmin.
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: U-plasminogen activator]]
+[[Category: Huang, M D]]
+[[Category: Jiang, L G]]
 [[Category: Zhang, X]]
+[[Category: Halogen bonding]]
+[[Category: Hydrolase-hydrolase inhibitor complex]]
+[[Category: P1 group]]
+[[Category: Protease inhibitor]]
+[[Category: Serine protease]]
+[[Category: Upa]]