6du3: Difference between revisions

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-'''Unreleased structure'''
-The entry 6du3 is ON HOLD  until Paper Publication
+==Structure of Scp1 D96N bound to REST-pS861/4 peptide==
+<StructureSection load='6du3' size='340' side='right' caption='[[6du3]], [[Resolution|resolution]] 2.58&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6du3]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DU3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DU3 FirstGlance]. <br>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr>
+<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6du2|6du2]]</td></tr>
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoprotein_phosphatase Phosphoprotein phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.16 3.1.3.16] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6du3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6du3 OCA], [http://pdbe.org/6du3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6du3 RCSB], [http://www.ebi.ac.uk/pdbsum/6du3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6du3 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[[http://www.uniprot.org/uniprot/CTDS1_HUMAN CTDS1_HUMAN]] Preferentially catalyzes the dephosphorylation of 'Ser-5' within the tandem 7 residues repeats in the C-terminal domain (CTD) of the largest RNA polymerase II subunit POLR2A. Negatively regulates RNA polymerase II transcription, possibly by controlling the transition from initiation/capping to processive transcript elongation. Recruited by REST to neuronal genes that contain RE-1 elements, leading to neuronal gene silencing in non-neuronal cells.<ref>PMID:12721286</ref> <ref>PMID:15681389</ref>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The RE1-silencing transcription factor (REST) is the major scaffold protein for assembly of neuronal gene silencing complexes that suppress gene transcription through regulating the surrounding chromatin structure. REST represses neuronal gene expression in stem cells and non-neuronal cells, but it is minimally expressed in neuronal cells to ensure proper neuronal development. Dysregulation of REST function has been implicated in several cancers and neurological diseases. Modulating REST gene silencing is challenging since cellular and developmental differences can affect its activity. We therefore considered the possibility of modulating REST activity through its regulatory proteins. The human small C-terminal domain phosphatase 1 (SCP1) regulates the phosphorylation state of REST at sites that function as REST degradation checkpoints. Using kinetic analysis and direct visualization with X-ray crystallography, we show that SCP1 dephosphorylates two degron phosphosites of REST with a clear preference for phosphoserine 861 (pS861). Furthermore, we show that SCP1 stabilizes REST protein levels which sustains REST's gene silencing function in HEK293 cells. In summary, our findings strongly suggest that REST is a bona fide substrate for SCP1 in vivo and that SCP1 phosphatase activity protects REST against degradation. These observations indicate that targeting REST via its regulatory protein SCP1 can modulate its activity and alter signaling in this essential developmental pathway.
-Authors:
+Phosphatase activity of Small C-terminal domain phosphatase 1 (SCP1) controls the stability of the key neuronal regulator RE1-silencing transcription factor (REST).,Burkholder NT, Mayfield JE, Yu X, Irani S, Arce DK, Jiang F, Matthews W, Xue Y, Zhang YJ J Biol Chem. 2018 Sep 14. pii: RA118.004722. doi: 10.1074/jbc.RA118.004722. PMID:30217818<ref>PMID:30217818</ref>
-Description:
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
+<div class="pdbe-citations 6du3" style="background-color:#fffaf0;"></div>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Phosphoprotein phosphatase]]
+[[Category: Arce, D K]]
+[[Category: Burkholder, N T]]
+[[Category: Irani, S]]
+[[Category: Jiang, F]]
+[[Category: Matthews, W]]
+[[Category: Mayfield, J E]]
+[[Category: Xue, Y]]
+[[Category: Yu, X]]
+[[Category: Zhang, Y J]]
+[[Category: Hydrolase]]
+[[Category: Hydrolase-peptide complex]]
+[[Category: Neurogenesis]]
+[[Category: Phosphatase]]
+[[Category: Phosphorylation]]
+[[Category: Transcription factor]]