6b03: Difference between revisions

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<StructureSection load='6b03' size='340' side='right' caption='[[6b03]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
<StructureSection load='6b03' size='340' side='right' caption='[[6b03]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6b03]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6B03 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6B03 FirstGlance]. <br>
<table><tr><td colspan='2'>[[6b03]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath] and [http://en.wikipedia.org/wiki/Erwinia_carotovora_subsp._atroseptica Erwinia carotovora subsp. atroseptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6B03 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6B03 FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6bo5|6bo5]]</td></tr>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6bo5|6bo5]]</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ECA0879 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=218491 Erwinia carotovora subsp. atroseptica]), FD2, PETF, PETF1, At1g60950, T7P1.9 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6b03 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6b03 OCA], [http://pdbe.org/6b03 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6b03 RCSB], [http://www.ebi.ac.uk/pdbsum/6b03 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6b03 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6b03 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6b03 OCA], [http://pdbe.org/6b03 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6b03 RCSB], [http://www.ebi.ac.uk/pdbsum/6b03 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6b03 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/FER2_ARATH FER2_ARATH]] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.  
[[http://www.uniprot.org/uniprot/FER2_ARATH FER2_ARATH]] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.  
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Iron is essential for life. Accessing iron from the environment can be a limiting factor that determines success in a given environmental niche. For bacteria, access of chelated iron from the environment is often mediated by TonB-dependent transporters (TBDTs), which are beta-barrel proteins that form sophisticated channels in the outer membrane. Reports of iron-bearing proteins being used as a source of iron indicate specific protein import reactions across the bacterial outer membrane. The molecular mechanism by which a folded protein can be imported in this way had remained mysterious, as did the evolutionary process that could lead to such a protein import pathway. How does the bacterium evolve the specificity factors that would be required to select and import a protein encoded on another organism's genome? We describe here a model whereby the plant iron-bearing protein ferredoxin can be imported across the outer membrane of the plant pathogen Pectobacterium by means of a Brownian ratchet mechanism, thereby liberating iron into the bacterium to enable its growth in plant tissues. This import pathway is facilitated by FusC, a member of the same protein family as the mitochondrial processing peptidase (MPP). The Brownian ratchet depends on binding sites discovered in crystal structures of FusC that engage a linear segment of the plant protein ferredoxin. Sequence relationships suggest that the bacterial gene encoding FusC has previously unappreciated homologues in plants and that the protein import mechanism employed by the bacterium is an evolutionary echo of the protein import pathway in plant mitochondria and plastids.
FusC, a member of the M16 protease family acquired by bacteria for iron piracy against plants.,Grinter R, Hay ID, Song J, Wang J, Teng D, Dhanesakaran V, Wilksch JJ, Davies MR, Littler D, Beckham SA, Henderson IR, Strugnell RA, Dougan G, Lithgow T PLoS Biol. 2018 Aug 2;16(8):e2006026. doi: 10.1371/journal.pbio.2006026., eCollection 2018 Aug. PMID:30071011<ref>PMID:30071011</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 6b03" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Arath]]
[[Category: Erwinia carotovora subsp. atroseptica]]
[[Category: Grinter, R]]
[[Category: Grinter, R]]
[[Category: Ferredoxin cleavage]]
[[Category: Ferredoxin cleavage]]

Revision as of 19:35, 15 August 2018

The crystal structure of the ferredoxin protease FusC in complex with its substrate plant ferredoxinThe crystal structure of the ferredoxin protease FusC in complex with its substrate plant ferredoxin

Structural highlights

6b03 is a 3 chain structure with sequence from Arath and Erwinia carotovora subsp. atroseptica. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Gene:ECA0879 (Erwinia carotovora subsp. atroseptica), FD2, PETF, PETF1, At1g60950, T7P1.9 (ARATH)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[FER2_ARATH] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Publication Abstract from PubMed

Iron is essential for life. Accessing iron from the environment can be a limiting factor that determines success in a given environmental niche. For bacteria, access of chelated iron from the environment is often mediated by TonB-dependent transporters (TBDTs), which are beta-barrel proteins that form sophisticated channels in the outer membrane. Reports of iron-bearing proteins being used as a source of iron indicate specific protein import reactions across the bacterial outer membrane. The molecular mechanism by which a folded protein can be imported in this way had remained mysterious, as did the evolutionary process that could lead to such a protein import pathway. How does the bacterium evolve the specificity factors that would be required to select and import a protein encoded on another organism's genome? We describe here a model whereby the plant iron-bearing protein ferredoxin can be imported across the outer membrane of the plant pathogen Pectobacterium by means of a Brownian ratchet mechanism, thereby liberating iron into the bacterium to enable its growth in plant tissues. This import pathway is facilitated by FusC, a member of the same protein family as the mitochondrial processing peptidase (MPP). The Brownian ratchet depends on binding sites discovered in crystal structures of FusC that engage a linear segment of the plant protein ferredoxin. Sequence relationships suggest that the bacterial gene encoding FusC has previously unappreciated homologues in plants and that the protein import mechanism employed by the bacterium is an evolutionary echo of the protein import pathway in plant mitochondria and plastids.

FusC, a member of the M16 protease family acquired by bacteria for iron piracy against plants.,Grinter R, Hay ID, Song J, Wang J, Teng D, Dhanesakaran V, Wilksch JJ, Davies MR, Littler D, Beckham SA, Henderson IR, Strugnell RA, Dougan G, Lithgow T PLoS Biol. 2018 Aug 2;16(8):e2006026. doi: 10.1371/journal.pbio.2006026., eCollection 2018 Aug. PMID:30071011[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Grinter R, Hay ID, Song J, Wang J, Teng D, Dhanesakaran V, Wilksch JJ, Davies MR, Littler D, Beckham SA, Henderson IR, Strugnell RA, Dougan G, Lithgow T. FusC, a member of the M16 protease family acquired by bacteria for iron piracy against plants. PLoS Biol. 2018 Aug 2;16(8):e2006026. doi: 10.1371/journal.pbio.2006026., eCollection 2018 Aug. PMID:30071011 doi:http://dx.doi.org/10.1371/journal.pbio.2006026

6b03, resolution 2.70Å

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