2k6v: Difference between revisions

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{{Large structure}}
==Solution structures of apo Sco1 protein from Thermus Thermophilus==
==Solution structures of apo Sco1 protein from Thermus Thermophilus==
<StructureSection load='2k6v' size='340' side='right' caption='[[2k6v]], [[NMR_Ensembles_of_Models | 31 NMR models]]' scene=''>
<StructureSection load='2k6v' size='340' side='right' caption='[[2k6v]], [[NMR_Ensembles_of_Models | 31 NMR models]]' scene=''>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2k6w|2k6w]], [[2k6y|2k6y]], [[2k6z|2k6z]], [[2k70|2k70]]</td></tr>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2k6w|2k6w]], [[2k6y|2k6y]], [[2k6z|2k6z]], [[2k70|2k70]]</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TTHA1942 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TTHA1942 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k6v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k6v OCA], [http://pdbe.org/2k6v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2k6v RCSB], [http://www.ebi.ac.uk/pdbsum/2k6v PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k6v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k6v OCA], [http://pdbe.org/2k6v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2k6v RCSB], [http://www.ebi.ac.uk/pdbsum/2k6v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2k6v ProSAT]</span></td></tr>
</table>
</table>
{{Large structure}}
{{Large structure}}
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Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k6/2k6v_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k6/2k6v_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k6v ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">

Revision as of 14:02, 18 July 2018

Warning: this is a large structure, and loading might take a long time or not happen at all.

Solution structures of apo Sco1 protein from Thermus ThermophilusSolution structures of apo Sco1 protein from Thermus Thermophilus

Structural highlights

2k6v is a 1 chain structure with sequence from Thet8. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Gene:TTHA1942 (THET8)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT
Warning: this is a large structure, and loading might take a long time or not happen at all.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

Copper is essential for proper functioning of cytochrome c oxidases, and therefore for cellular respiration in eukaryotes and many bacteria. Here we show that a new periplasmic protein (PCu(A)C) selectively inserts Cu(I) ions into subunit II of Thermus thermophilus ba(3) oxidase to generate a native Cu(A) site. The purported metallochaperone Sco1 is unable to deliver copper ions; instead, it works as a thiol-disulfide reductase to maintain the correct oxidation state of the Cu(A) cysteine ligands.

Mechanism of Cu(A) assembly.,Abriata LA, Banci L, Bertini I, Ciofi-Baffoni S, Gkazonis P, Spyroulias GA, Vila AJ, Wang S Nat Chem Biol. 2008 Oct;4(10):599-601. Epub 2008 Aug 31. PMID:18758441[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Abriata LA, Banci L, Bertini I, Ciofi-Baffoni S, Gkazonis P, Spyroulias GA, Vila AJ, Wang S. Mechanism of Cu(A) assembly. Nat Chem Biol. 2008 Oct;4(10):599-601. Epub 2008 Aug 31. PMID:18758441 doi:10.1038/nchembio.110
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