2nvt: Difference between revisions
No edit summary |
No edit summary |
||
| Line 4: | Line 4: | ||
|PDB= 2nvt |SIZE=350|CAPTION= <scene name='initialview01'>2nvt</scene>, resolution 3.36Å | |PDB= 2nvt |SIZE=350|CAPTION= <scene name='initialview01'>2nvt</scene>, resolution 3.36Å | ||
|SITE= | |SITE= | ||
|LIGAND= <scene name='pdbligand= | |LIGAND= <scene name='pdbligand=A:ADENOSINE-5'-MONOPHOSPHATE'>A</scene>, <scene name='pdbligand=C:CYTIDINE-5'-MONOPHOSPHATE'>C</scene>, <scene name='pdbligand=DA:2'-DEOXYADENOSINE-5'-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5'-MONOPHOSPHATE'>DT</scene>, <scene name='pdbligand=G:GUANOSINE-5'-MONOPHOSPHATE'>G</scene>, <scene name='pdbligand=G2P:PHOSPHOMETHYLPHOSPHONIC+ACID+GUANYLATE+ESTER'>G2P</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> | ||
|ACTIVITY= [http://en.wikipedia.org/wiki/DNA-directed_RNA_polymerase DNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.6 2.7.7.6] | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_RNA_polymerase DNA-directed RNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.6 2.7.7.6] </span> | ||
|GENE= | |GENE= | ||
|DOMAIN= | |||
|RELATEDENTRY=[[1sfo|1SFO]], [[1r9t|1R9T]], [[1r9s|1R9S]], [[2e2h|2E2H]], [[2e2i|2E2I]], [[2e2j|2E2J]], [[2nvq|2NVQ]], [[2nvs|2NVS]], [[2nvx|2NVX]], [[2nvy|2NVY]], [[2nvz|2NVZ]] | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nvt OCA], [http://www.ebi.ac.uk/pdbsum/2nvt PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2nvt RCSB]</span> | |||
}} | }} | ||
| Line 28: | Line 31: | ||
[[Category: Wang, D.]] | [[Category: Wang, D.]] | ||
[[Category: Westover, K D.]] | [[Category: Westover, K D.]] | ||
[[Category: dna]] | [[Category: dna]] | ||
[[Category: molecular machine]] | [[Category: molecular machine]] | ||
| Line 37: | Line 37: | ||
[[Category: transcription]] | [[Category: transcription]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:09:05 2008'' | ||
Revision as of 04:09, 31 March 2008
| |||||||
| , resolution 3.36Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , , , , , , , , , | ||||||
| Activity: | DNA-directed RNA polymerase, with EC number 2.7.7.6 | ||||||
| Related: | 1SFO, 1R9T, 1R9S, 2E2H, 2E2I, 2E2J, 2NVQ, 2NVS, 2NVX, 2NVY, 2NVZ
| ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
RNA Polymerase II Elongation Complex in 150 mM Mg+2 with GMPCPP
OverviewOverview
New structures of RNA polymerase II (pol II) transcribing complexes reveal a likely key to transcription. The trigger loop swings beneath a correct nucleoside triphosphate (NTP) in the nucleotide addition site, closing off the active center and forming an extensive network of interactions with the NTP base, sugar, phosphates, and additional pol II residues. A histidine side chain in the trigger loop, precisely positioned by these interactions, may literally "trigger" phosphodiester bond formation. Recognition and catalysis are thus coupled, ensuring the fidelity of transcription.
About this StructureAbout this Structure
2NVT is a Protein complex structure of sequences from Saccharomyces cerevisiae. Full crystallographic information is available from OCA.
ReferenceReference
Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis., Wang D, Bushnell DA, Westover KD, Kaplan CD, Kornberg RD, Cell. 2006 Dec 1;127(5):941-54. PMID:17129781
Page seeded by OCA on Mon Mar 31 04:09:05 2008