2hmk

Crystal Structure of Naphthalene 1,2-Dioxygenase Bound to PhenanthreneCrystal Structure of Naphthalene 1,2-Dioxygenase Bound to Phenanthrene

Structural highlights 2hmk is a 2 chain structure with sequence from Achromobacter georgiopolitanum. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance. Ligands: , , , , Related: 1o7h, 1o7g, 1o7m, 1o7n, 1o7p, 1o7w, 1uuv, 1uuw Gene: doxB (Achromobacter georgiopolitanum), doxD (Achromobacter georgiopolitanum) Activity: Naphthalene 1,2-dioxygenase, with EC number 1.14.12.12 Resources: FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT Function [NDOB_PSEU8] Component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyzes the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. [NDOC_PSEU8] Component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyzes the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. The beta subunit may be responsible for the substrate specificity of the enzyme. Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. Publication Abstract from PubMed Rieske oxygenase (RO) systems are two- and three-component enzyme systems that catalyze the formation of cis-dihydrodiols from aromatic substrates. Degradation of pollutants in contaminated soil and generation of chiral synthons have been the major foci of RO research. Substrate specificity and product regio- and stereoselectivity have been shown to vary between individual ROs. While directed evolution methods for altering RO function have been successful in the past, rational engineering of these enzymes still poses a challenge due to the lack of structural understanding. Here we examine the structural changes induced by mutation of Phe-352 in naphthalene 1,2-dioxygenase from Pseudomonas sp. strain NCIB 9816-4 (NDO-O(9816-4)). Structures of the Phe-352-Val mutant in native form and in complex with phenanthrene and anthracene, along with those of wild-type NDO-O(9816-4) in complex with phenanthrene, anthracene, and 3-nitrotoluene, are presented. Phenanthrene was shown to bind in a different orientation in the Phe-352-Val mutant active site from that in the wild type, while anthracene was found to bind in similar positions in both enzymes. Two orientations of 3-nitrotoluene were observed, i.e., a productive and a nonproductive orientation. These orientations help explain why NDO-O(9816-4) forms different products from 3-nitrotoluene than those made from nitrobenzene dioxygenase. Comparison of these structures among themselves and with other known ROs bound to substrates reveals that the orientation of substrate binding at the active site is the primary determinant of product regio- and stereoselectivity. Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase.,Ferraro DJ, Okerlund AL, Mowers JC, Ramaswamy S J Bacteriol. 2006 Oct;188(19):6986-94. PMID:16980501 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See Also Dioxygenase

spinqualitylabelsall models 2hmk, resolution 1.65Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image