2dfj: Difference between revisions

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==Crystal Structure of the Diadenosine Tetraphosphate Hydrolase from Shigella flexneri 2a==
==Crystal Structure of the Diadenosine Tetraphosphate Hydrolase from Shigella flexneri 2a==
<StructureSection load='2dfj' size='340' side='right' caption='[[2dfj]], [[Resolution|resolution]] 2.72&Aring;' scene=''>
<StructureSection load='2dfj' size='340' side='right' caption='[[2dfj]], [[Resolution|resolution]] 2.72&Aring;' scene=''>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Bis(5'-nucleosyl)-tetraphosphatase_(symmetrical) Bis(5'-nucleosyl)-tetraphosphatase (symmetrical)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.41 3.6.1.41] </span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Bis(5'-nucleosyl)-tetraphosphatase_(symmetrical) Bis(5'-nucleosyl)-tetraphosphatase (symmetrical)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.41 3.6.1.41] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dfj OCA], [http://pdbe.org/2dfj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dfj RCSB], [http://www.ebi.ac.uk/pdbsum/2dfj PDBsum]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dfj OCA], [http://pdbe.org/2dfj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dfj RCSB], [http://www.ebi.ac.uk/pdbsum/2dfj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2dfj ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
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Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/df/2dfj_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/df/2dfj_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dfj ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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__TOC__

Revision as of 09:51, 30 May 2018

Crystal Structure of the Diadenosine Tetraphosphate Hydrolase from Shigella flexneri 2aCrystal Structure of the Diadenosine Tetraphosphate Hydrolase from Shigella flexneri 2a

Structural highlights

2dfj is a 2 chain structure with sequence from Shigella flexneri 2a. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Activity:Bis(5'-nucleosyl)-tetraphosphatase (symmetrical), with EC number 3.6.1.41
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2dfj, resolution 2.72Å

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OCA