6fgt: Difference between revisions

← Older edit Newer edit →

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 6fgt is ON HOLD  until Paper Publication
+==Crystal Structure of BAZ2B bromodomain in complex with 1-methylpyridinone compound 3==
+<StructureSection load='6fgt' size='340' side='right' caption='[[6fgt]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6fgt]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FGT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FGT FirstGlance]. <br>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=D9T:~{N}-[(1-azanylcyclohexyl)methyl]-1-methyl-6-oxidanylidene-pyridine-3-carboxamide'>D9T</scene></td></tr>
+<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6fg6|6fg6]], [[6fgf|6fgf]], [[6fgg|6fgg]], [[6fgh|6fgh]], [[6fgi|6fgi]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fgt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fgt OCA], [http://pdbe.org/6fgt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fgt RCSB], [http://www.ebi.ac.uk/pdbsum/6fgt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fgt ProSAT]</span></td></tr>
+</table>
+== Function ==
+[[http://www.uniprot.org/uniprot/BAZ2B_HUMAN BAZ2B_HUMAN]] May play a role in transcriptional regulation interacting with ISWI.
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The bromodomain-containing protein BAZ2A is a validated target in prostate cancer, while the function of its paralog BAZ2B is still undefined. The bromodomains of BAZ2A and BAZ2B have a very similar binding site for their natural ligand, the acetylated lysine side chain. Here, we present an analysis of the binding modes of eight compounds belonging to three distinct chemical classes. For all compounds, the moiety mimicking the natural ligand makes essentially identical interactions in the BAZ2A and BAZ2B bromodomains. In contrast, the rest of the molecule is partially solvent exposed and shows different orientations and interactions in the two bromodomains. Some of these differences could be exploited for designing selective inhibitors within the BAZ2 bromodomain subfamily.
-Authors: Dalle Vedove, A., Spiliotopoulos, D., Lolli, G., Caflisch, A.
+Structural Analysis of Small Molecule Binding to the BAZ2A and BAZ2B Bromodomains.,Dalle Vedove A, Spiliotopoulos D, D'Agostino VG, Marchand JR, Unzue A, Nevado C, Lolli G, Caflisch A ChemMedChem. 2018 May 17. doi: 10.1002/cmdc.201800234. PMID:29770599<ref>PMID:29770599</ref>
-Description: Crystal Structure of BAZ2B bromodomain in complex with 1-methylpyridinone compound 3
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
-[[Category: Dalle Vedove, A]]
+<div class="pdbe-citations 6fgt" style="background-color:#fffaf0;"></div>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Caflisch, A]]
 [[Category: Lolli, G]]
 [[Category: Spiliotopoulos, D]]
-[[Category: Caflisch, A]]
+[[Category: Vedove, A Dalle]]
+[[Category: Four helical bundle]]
+[[Category: Transcription]]