2id0: Difference between revisions
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|PDB= 2id0 |SIZE=350|CAPTION= <scene name='initialview01'>2id0</scene>, resolution 2.350Å | |PDB= 2id0 |SIZE=350|CAPTION= <scene name='initialview01'>2id0</scene>, resolution 2.350Å | ||
|SITE= | |SITE= | ||
|LIGAND= <scene name='pdbligand=MN:MANGANESE (II) ION'>MN</scene> | |LIGAND= <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene> | ||
|ACTIVITY= [http://en.wikipedia.org/wiki/Exoribonuclease_II Exoribonuclease II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.13.1 3.1.13.1] | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Exoribonuclease_II Exoribonuclease II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.13.1 3.1.13.1] </span> | ||
|GENE= rnb ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]) | |GENE= rnb ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli]) | ||
|DOMAIN= | |||
|RELATEDENTRY= | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2id0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2id0 OCA], [http://www.ebi.ac.uk/pdbsum/2id0 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2id0 RCSB]</span> | |||
}} | }} | ||
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[[Category: Zhang, J.]] | [[Category: Zhang, J.]] | ||
[[Category: Zuo, Y.]] | [[Category: Zuo, Y.]] | ||
[[Category: exonuclease]] | [[Category: exonuclease]] | ||
[[Category: exoribonuclease]] | [[Category: exoribonuclease]] | ||
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[[Category: rnr family]] | [[Category: rnr family]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:42:35 2008'' | ||
Revision as of 03:42, 31 March 2008
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| , resolution 2.350Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , | ||||||
| Gene: | rnb (Escherichia coli) | ||||||
| Activity: | Exoribonuclease II, with EC number 3.1.13.1 | ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Escherichia coli RNase II
OverviewOverview
RNase II is a member of the widely distributed RNR family of exoribonucleases, which are highly processive 3'-->5' hydrolytic enzymes that play an important role in mRNA decay. Here, we report the crystal structure of E. coli RNase II, which reveals an architecture reminiscent of the RNA exosome. Three RNA-binding domains come together to form a clamp-like assembly, which can only accommodate single-stranded RNA. This leads into a narrow, basic channel that ends at the putative catalytic center that is completely enclosed within the body of the protein. The putative path for RNA agrees well with biochemical data indicating that a 3' single strand overhang of 7-10 nt is necessary for binding and hydrolysis by RNase II. The presence of the clamp and the narrow channel provides an explanation for the processivity of RNase II and for why its action is limited to single-stranded RNA.
About this StructureAbout this Structure
2ID0 is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.
ReferenceReference
Structural basis for processivity and single-strand specificity of RNase II., Zuo Y, Vincent HA, Zhang J, Wang Y, Deutscher MP, Malhotra A, Mol Cell. 2006 Oct 6;24(1):149-56. Epub 2006 Sep 21. PMID:16996291
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