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==Structure of the catalytic domain of Aspergillus niger Glucoamylase== | |||
<StructureSection load='6frv' size='340' side='right' caption='[[6frv]], [[Resolution|resolution]] 2.30Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[6frv]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FRV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FRV FirstGlance]. <br> | |||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | |||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-glucosidase Glucan 1,4-alpha-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.3 3.2.1.3] </span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6frv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6frv OCA], [http://pdbe.org/6frv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6frv RCSB], [http://www.ebi.ac.uk/pdbsum/6frv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6frv ProSAT]</span></td></tr> | |||
</table> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Glucoamylases are one of the most important classes of enzymes in the industrial degradation of starch biomass. They consist of a catalytic domain and a carbohydrate-binding domain (CBM), with the latter being important for the interaction with the polymeric substrate. Whereas the catalytic mechanisms and structures of the individual domains are well known, the spatial arrangement of the domains with respect to each other and its influence on activity are not fully understood. Here, the structures of three industrially used fungal glucoamylases, two of which are full length, have been crystallized and determined. It is shown for the first time that the relative orientation between the CBM and the catalytic domain is flexible, as they can adopt different orientations independently of ligand binding, suggesting a role as an anchor to increase the contact time and the relative concentration of substrate near the active site. The flexibility in the orientations of the two domains presented a considerable challenge for the crystallization of the enzymes. | |||
Structural insight into industrially relevant glucoamylases: flexible positions of starch-binding domains.,Roth C, Moroz OV, Ariza A, Skov LK, Ayabe K, Davies GJ, Wilson KS Acta Crystallogr D Struct Biol. 2018 May 1;74(Pt 5):463-470. doi:, 10.1107/S2059798318004989. Epub 2018 Apr 26. PMID:29717717<ref>PMID:29717717</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
<div class="pdbe-citations 6frv" style="background-color:#fffaf0;"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Glucan 1,4-alpha-glucosidase]] | |||
[[Category: Ariza, A]] | [[Category: Ariza, A]] | ||
[[Category: | [[Category: Davies, G J]] | ||
[[Category: Friis, E | [[Category: Friis, E P]] | ||
[[Category: Moroz, O V]] | |||
[[Category: Roth, C]] | [[Category: Roth, C]] | ||
[[Category: | [[Category: Wilson, K S]] | ||
[[Category: | [[Category: Glycoside hydrolase]] | ||
[[Category: Glycosylation]] | |||
[[Category: Hydrolase]] | |||
[[Category: Starch degradation]] | |||
Revision as of 09:22, 9 May 2018
Structure of the catalytic domain of Aspergillus niger GlucoamylaseStructure of the catalytic domain of Aspergillus niger Glucoamylase
Structural highlights
Publication Abstract from PubMedGlucoamylases are one of the most important classes of enzymes in the industrial degradation of starch biomass. They consist of a catalytic domain and a carbohydrate-binding domain (CBM), with the latter being important for the interaction with the polymeric substrate. Whereas the catalytic mechanisms and structures of the individual domains are well known, the spatial arrangement of the domains with respect to each other and its influence on activity are not fully understood. Here, the structures of three industrially used fungal glucoamylases, two of which are full length, have been crystallized and determined. It is shown for the first time that the relative orientation between the CBM and the catalytic domain is flexible, as they can adopt different orientations independently of ligand binding, suggesting a role as an anchor to increase the contact time and the relative concentration of substrate near the active site. The flexibility in the orientations of the two domains presented a considerable challenge for the crystallization of the enzymes. Structural insight into industrially relevant glucoamylases: flexible positions of starch-binding domains.,Roth C, Moroz OV, Ariza A, Skov LK, Ayabe K, Davies GJ, Wilson KS Acta Crystallogr D Struct Biol. 2018 May 1;74(Pt 5):463-470. doi:, 10.1107/S2059798318004989. Epub 2018 Apr 26. PMID:29717717[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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