1z91: Difference between revisions
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==x-ray crystal structure of apo-OhrRC15S in reduced form: MarR family protein== | ==x-ray crystal structure of apo-OhrRC15S in reduced form: MarR family protein== | ||
<StructureSection load='1z91' size='340' side='right' caption='[[1z91]], [[Resolution|resolution]] 2.50Å' scene=''> | <StructureSection load='1z91' size='340' side='right' caption='[[1z91]], [[Resolution|resolution]] 2.50Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[1z91]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/" | <table><tr><td colspan='2'>[[1z91]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z91 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Z91 FirstGlance]. <br> | ||
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ohrR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 " | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ohrR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1z91 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z91 OCA], [http://pdbe.org/1z91 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1z91 RCSB], [http://www.ebi.ac.uk/pdbsum/1z91 PDBsum]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1z91 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z91 OCA], [http://pdbe.org/1z91 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1z91 RCSB], [http://www.ebi.ac.uk/pdbsum/1z91 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1z91 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
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Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z9/1z91_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z9/1z91_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
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</div> | </div> | ||
<div class="pdbe-citations 1z91" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 1z91" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Vibrio subtilis ehrenberg 1835]] | ||
[[Category: Brennan, R G]] | [[Category: Brennan, R G]] | ||
[[Category: Fuangthong, M]] | [[Category: Fuangthong, M]] | ||
Revision as of 11:54, 2 May 2018
x-ray crystal structure of apo-OhrRC15S in reduced form: MarR family proteinx-ray crystal structure of apo-OhrRC15S in reduced form: MarR family protein
Structural highlights
Function[OHRR_BACSU] Organic peroxide sensor. Represses the expression of the peroxide-inducible gene ohrA by cooperative binding to two inverted repeat elements.[1] Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. Publication Abstract from PubMedThe mechanisms by which Bacillus subtilis OhrR, a member of the MarR family of transcription regulators, binds the ohrA operator and is induced by oxidation of its lone cysteine residue by organic hydroperoxides to sulphenic acid are unknown. Here, we describe the crystal structures of reduced OhrR and an OhrR-ohrA operator complex. To bind DNA, OhrR employs a chimeric winged helix-turn-helix DNA binding motif, which is composed of extended eukaryotic-like wings, prokaryotic helix-turn-helix motifs, and helix-helix elements. The reactivity of the peroxide-sensing cysteine is not modulated by proximal basic residues but largely by the positive dipole of helix alpha1. Induction originates from the alleviation of intersubunit steric clash between the sulphenic acid moieties of the oxidized sensor cysteines and nearby tyrosines and methionines. The structure of the OhrR-ohrA operator complex reveals the DNA binding mechanism of the entire MarR family and suggests a common inducer binding pocket. Structure of an OhrR-ohrA operator complex reveals the DNA binding mechanism of the MarR family.,Hong M, Fuangthong M, Helmann JD, Brennan RG Mol Cell. 2005 Oct 7;20(1):131-41. PMID:16209951[2] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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