2d6c: Difference between revisions
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|PDB= 2d6c |SIZE=350|CAPTION= <scene name='initialview01'>2d6c</scene>, resolution 2.26Å | |PDB= 2d6c |SIZE=350|CAPTION= <scene name='initialview01'>2d6c</scene>, resolution 2.26Å | ||
|SITE= | |SITE= | ||
|LIGAND= <scene name='pdbligand=HME:PORPHYCENE+CONTAINING+FE'>HME</scene> | |LIGAND= <scene name='pdbligand=HME:PORPHYCENE+CONTAINING+FE'>HME</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene> | ||
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
|DOMAIN= | |||
|RELATEDENTRY= | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d6c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d6c OCA], [http://www.ebi.ac.uk/pdbsum/2d6c PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2d6c RCSB]</span> | |||
}} | }} | ||
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[[Category: Shiro, Y.]] | [[Category: Shiro, Y.]] | ||
[[Category: Sugimoto, H.]] | [[Category: Sugimoto, H.]] | ||
[[Category: hemoprotein]] | [[Category: hemoprotein]] | ||
[[Category: myoglobin]] | [[Category: myoglobin]] | ||
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[[Category: structural genomic]] | [[Category: structural genomic]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:30:54 2008'' | ||
Revision as of 02:30, 31 March 2008
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| , resolution 2.26Å | |||||||
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| Ligands: | , | ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal structure of myoglobin reconstituted with iron porphycene
OverviewOverview
The incorporation of an artificially created metal complex into an apomyoglobin is one of the attractive methods in a series of hemoprotein modifications. Single crystals of sperm whale myoglobin reconstituted with 13,16-dicarboxyethyl-2,7-diethyl-3,6,12,17-tetramethylporphycenatoiron(III ) were obtained in the imidazole buffer, and the 3D structure with a 2.25-A resolution indicates that the iron porphycene, a structural isomer of hemin, is located in the normal position of the heme pocket. Furthermore, it was found that the reconstituted myoglobin catalyzed the H2O2-dependent oxidations of substrates such as guaiacol, thioanisole, and styrene. At pH 7.0 and 20 degrees C, the initial rate of the guaiacol oxidation is 11-fold faster than that observed for the native myoglobin. Moreover, the stopped-flow analysis of the reaction of the reconstituted protein with H2O2 suggested the formation of two reaction intermediates, compounds II- and III-like species, in the absence of a substrate. It is a rare example that compound III is formed via compound II in myoglobin chemistry. The enhancement of the peroxidase activity and the formation of the stable compound III in myoglobin with iron porphycene mainly arise from the strong coordination of the Fe-His93 bond.
About this StructureAbout this Structure
2D6C is a Single protein structure of sequence from Physeter catodon. Full crystallographic information is available from OCA.
ReferenceReference
Crystal structure and peroxidase activity of myoglobin reconstituted with iron porphycene., Hayashi T, Murata D, Makino M, Sugimoto H, Matsuo T, Sato H, Shiro Y, Hisaeda Y, Inorg Chem. 2006 Dec 25;45(26):10530-6. PMID:17173408
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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)
OCA- Pages with broken file links
- Physeter catodon
- Single protein
- Hayashi, T.
- Hisaeda, Y.
- Makino, M.
- Matsuo, T.
- Murata, D.
- RSGI, RIKEN Structural Genomics/Proteomics Initiative.
- Sato, H.
- Shiro, Y.
- Sugimoto, H.
- Hemoprotein
- Myoglobin
- Oxygen storage/transport
- Porphycene
- Riken structural genomics/proteomics initiative
- Rsgi
- Structural genomic