5no9: Difference between revisions

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<StructureSection load='5no9' size='340' side='right' caption='[[5no9]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
<StructureSection load='5no9' size='340' side='right' caption='[[5no9]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5no9]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NO9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NO9 FirstGlance]. <br>
<table><tr><td colspan='2'>[[5no9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cbs_118.80 Cbs 118.80]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NO9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NO9 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=95Z:(2~{S},3~{S},4~{R},5~{S},6~{R})-3-azanyl-6-(hydroxymethyl)oxane-2,4,5-triol'>95Z</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=95Z:alpha-D-Mannosamine'>95Z</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5nnw|5nnw]]</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5nnw|5nnw]]</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SD21-1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=65070 CBS 118.80])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5no9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5no9 OCA], [http://pdbe.org/5no9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5no9 RCSB], [http://www.ebi.ac.uk/pdbsum/5no9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5no9 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5no9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5no9 OCA], [http://pdbe.org/5no9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5no9 RCSB], [http://www.ebi.ac.uk/pdbsum/5no9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5no9 ProSAT]</span></td></tr>
</table>
</table>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Cbs 118 80]]
[[Category: Anderluh, G]]
[[Category: Anderluh, G]]
[[Category: Lenarcic, T]]
[[Category: Lenarcic, T]]

Revision as of 11:38, 10 January 2018

NLPPya in complex with mannosamineNLPPya in complex with mannosamine

Structural highlights

5no9 is a 4 chain structure with sequence from Cbs 118.80. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
Gene:SD21-1 (CBS 118.80)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

Necrosis and ethylene-inducing peptide 1-like (NLP) proteins constitute a superfamily of proteins produced by plant pathogenic bacteria, fungi, and oomycetes. Many NLPs are cytotoxins that facilitate microbial infection of eudicot, but not of monocot plants. Here, we report glycosylinositol phosphorylceramide (GIPC) sphingolipids as NLP toxin receptors. Plant mutants with altered GIPC composition were more resistant to NLP toxins. Binding studies and x-ray crystallography showed that NLPs form complexes with terminal monomeric hexose moieties of GIPCs that result in conformational changes within the toxin. Insensitivity to NLP cytolysins of monocot plants may be explained by the length of the GIPC head group and the architecture of the NLP sugar-binding site. We unveil early steps in NLP cytolysin action that determine plant clade-specific toxin selectivity.

Eudicot plant-specific sphingolipids determine host selectivity of microbial NLP cytolysins.,Lenarcic T, Albert I, Bohm H, Hodnik V, Pirc K, Zavec AB, Podobnik M, Pahovnik D, Zagar E, Pruitt R, Greimel P, Yamaji-Hasegawa A, Kobayashi T, Zienkiewicz A, Gomann J, Mortimer JC, Fang L, Mamode-Cassim A, Deleu M, Lins L, Oecking C, Feussner I, Mongrand S, Anderluh G, Nurnberger T Science. 2017 Dec 15;358(6369):1431-1434. doi: 10.1126/science.aan6874. PMID:29242345[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Lenarcic T, Albert I, Bohm H, Hodnik V, Pirc K, Zavec AB, Podobnik M, Pahovnik D, Zagar E, Pruitt R, Greimel P, Yamaji-Hasegawa A, Kobayashi T, Zienkiewicz A, Gomann J, Mortimer JC, Fang L, Mamode-Cassim A, Deleu M, Lins L, Oecking C, Feussner I, Mongrand S, Anderluh G, Nurnberger T. Eudicot plant-specific sphingolipids determine host selectivity of microbial NLP cytolysins. Science. 2017 Dec 15;358(6369):1431-1434. doi: 10.1126/science.aan6874. PMID:29242345 doi:http://dx.doi.org/10.1126/science.aan6874

5no9, resolution 1.75Å

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