6evf: Difference between revisions

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<StructureSection load='6evf' size='340' side='right' caption='[[6evf]], [[Resolution|resolution]] 2.06&Aring;' scene=''>
<StructureSection load='6evf' size='340' side='right' caption='[[6evf]], [[Resolution|resolution]] 2.06&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6evf]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6EVF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6EVF FirstGlance]. <br>
<table><tr><td colspan='2'>[[6evf]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6EVF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6EVF FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4LU:1-DEOXY-5-O-PHOSPHONO-1-(3,3,4,5-TETRAMETHYL-9,11-DIOXO-2,3,8,9,10,11-HEXAHYDRO-7H-QUINOLINO[1,8-FG]PTERIDIN-12-IUM-7-YL)-D-RIBITOL'>4LU</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4LU:1-DEOXY-5-O-PHOSPHONO-1-(3,3,4,5-TETRAMETHYL-9,11-DIOXO-2,3,8,9,10,11-HEXAHYDRO-7H-QUINOLINO[1,8-FG]PTERIDIN-12-IUM-7-YL)-D-RIBITOL'>4LU</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">FDC1, YDR539W, D3703.2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phenacrylate_decarboxylase Phenacrylate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.102 4.1.1.102] </span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phenacrylate_decarboxylase Phenacrylate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.102 4.1.1.102] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6evf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6evf OCA], [http://pdbe.org/6evf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6evf RCSB], [http://www.ebi.ac.uk/pdbsum/6evf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6evf ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6evf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6evf OCA], [http://pdbe.org/6evf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6evf RCSB], [http://www.ebi.ac.uk/pdbsum/6evf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6evf ProSAT]</span></td></tr>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Baker's yeast]]
[[Category: Phenacrylate decarboxylase]]
[[Category: Phenacrylate decarboxylase]]
[[Category: Bailey, S S]]
[[Category: Bailey, S S]]

Revision as of 12:02, 27 December 2017

Structure of E285D S. cerevisiae Fdc1 with prFMN in the hydroxylated formStructure of E285D S. cerevisiae Fdc1 with prFMN in the hydroxylated form

Structural highlights

6evf is a 4 chain structure with sequence from Baker's yeast. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, ,
Gene:FDC1, YDR539W, D3703.2 (Baker's yeast)
Activity:Phenacrylate decarboxylase, with EC number 4.1.1.102
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[FDC1_YEAST] Required for the decarboxylation of phenylacrylic acids like ferulic acid, p-coumaric acid or cinnamic acid. Not essential for ubiquinone synthesis.[1]

References

  1. ↑ Mukai N, Masaki K, Fujii T, Kawamukai M, Iefuji H. PAD1 and FDC1 are essential for the decarboxylation of phenylacrylic acids in Saccharomyces cerevisiae. J Biosci Bioeng. 2010 Jun;109(6):564-9. doi: 10.1016/j.jbiosc.2009.11.011. Epub, 2009 Dec 16. PMID:20471595 doi:http://dx.doi.org/10.1016/j.jbiosc.2009.11.011

6evf, resolution 2.06Å

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