5oar: Difference between revisions
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==Crystal structure of native beta-N-acetylhexosaminidase isolated from Aspergillus oryzae== | |||
<StructureSection load='5oar' size='340' side='right' caption='[[5oar]], [[Resolution|resolution]] 2.30Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[5oar]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspergillus_oryzae Aspergillus oryzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OAR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OAR FirstGlance]. <br> | |||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NGT:3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL'>NGT</scene>, <scene name='pdbligand=TBR:HEXATANTALUM+DODECABROMIDE'>TBR</scene></td></tr> | |||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-N-acetylhexosaminidase Beta-N-acetylhexosaminidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.52 3.2.1.52] </span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5oar FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oar OCA], [http://pdbe.org/5oar PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5oar RCSB], [http://www.ebi.ac.uk/pdbsum/5oar PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5oar ProSAT]</span></td></tr> | |||
</table> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
beta-N-acetylhexosaminidase from the fungus Aspergillus oryzae is a secreted extracellular enzyme that cleaves chitobiose into constituent monosaccharides. It belongs to the GH 20 glycoside hydrolase family and consists of two N-glycosylated catalytic cores noncovalently associated with two 10-kDa O-glycosylated propeptides. We used X-ray diffraction and mass spectrometry to determine the structure of Aspergillus oryzae beta-N-acetylhexosaminidase isolated from its natural source. The three-dimensional structure determined and refined to a resolution of 2.3 A revealed that this enzyme is active as a uniquely tight dimeric assembly further stabilized by N- and O-glycosylation. The propeptide from one subunit forms extensive noncovalent interactions with the catalytic core of the second subunit in the dimer, and this chain swap suggests the distinctive structural mechanism of the enzyme's activation. Unique structural features of beta-N-acetylhexosaminidase from Aspergillus oryzae define a very stable and robust framework suitable for biotechnological applications. The crystal structure reported here provides structural insights into the enzyme architecture as well as the detailed configuration of the active site. These insights can be applied to rational enzyme engineering. This article is protected by copyright. All rights reserved. | |||
Crystal structure of native beta-N-acetylhexosaminidase isolated from Aspergillus oryzae sheds light onto its substrate specificity, high stability, and regulation by propeptide.,Skerlova J, Blaha J, Pachl P, Hofbauerova K, Kukacka Z, Man P, Pompach P, Novak P, Otwinowski Z, Brynda J, Vanek O, Rezacova P FEBS J. 2017 Dec 14. doi: 10.1111/febs.14360. PMID:29239122<ref>PMID:29239122</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
<div class="pdbe-citations 5oar" style="background-color:#fffaf0;"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Aspergillus oryzae]] | |||
[[Category: Beta-N-acetylhexosaminidase]] | |||
[[Category: Brynda, J]] | |||
[[Category: Otwinowski, Z]] | |||
[[Category: Pachl, P]] | |||
[[Category: Rezacova, P]] | |||
[[Category: Skerlova, J]] | |||
[[Category: Vanek, O]] | |||
[[Category: Carbohydrate biotechnology]] | |||
[[Category: Glycosylation]] | |||
[[Category: Hydrolase]] | |||
[[Category: Propeptide]] | |||
Revision as of 11:25, 27 December 2017
Crystal structure of native beta-N-acetylhexosaminidase isolated from Aspergillus oryzaeCrystal structure of native beta-N-acetylhexosaminidase isolated from Aspergillus oryzae
Structural highlights
Publication Abstract from PubMedbeta-N-acetylhexosaminidase from the fungus Aspergillus oryzae is a secreted extracellular enzyme that cleaves chitobiose into constituent monosaccharides. It belongs to the GH 20 glycoside hydrolase family and consists of two N-glycosylated catalytic cores noncovalently associated with two 10-kDa O-glycosylated propeptides. We used X-ray diffraction and mass spectrometry to determine the structure of Aspergillus oryzae beta-N-acetylhexosaminidase isolated from its natural source. The three-dimensional structure determined and refined to a resolution of 2.3 A revealed that this enzyme is active as a uniquely tight dimeric assembly further stabilized by N- and O-glycosylation. The propeptide from one subunit forms extensive noncovalent interactions with the catalytic core of the second subunit in the dimer, and this chain swap suggests the distinctive structural mechanism of the enzyme's activation. Unique structural features of beta-N-acetylhexosaminidase from Aspergillus oryzae define a very stable and robust framework suitable for biotechnological applications. The crystal structure reported here provides structural insights into the enzyme architecture as well as the detailed configuration of the active site. These insights can be applied to rational enzyme engineering. This article is protected by copyright. All rights reserved. Crystal structure of native beta-N-acetylhexosaminidase isolated from Aspergillus oryzae sheds light onto its substrate specificity, high stability, and regulation by propeptide.,Skerlova J, Blaha J, Pachl P, Hofbauerova K, Kukacka Z, Man P, Pompach P, Novak P, Otwinowski Z, Brynda J, Vanek O, Rezacova P FEBS J. 2017 Dec 14. doi: 10.1111/febs.14360. PMID:29239122[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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