1nar: Difference between revisions
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==CRYSTAL STRUCTURE OF NARBONIN REFINED AT 1.8 ANGSTROMS RESOLUTION== | ==CRYSTAL STRUCTURE OF NARBONIN REFINED AT 1.8 ANGSTROMS RESOLUTION== | ||
<StructureSection load='1nar' size='340' side='right' caption='[[1nar]], [[Resolution|resolution]] 1.80Å' scene=''> | <StructureSection load='1nar' size='340' side='right' caption='[[1nar]], [[Resolution|resolution]] 1.80Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[1nar]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Narbonne_vetch Narbonne vetch]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NAR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1NAR FirstGlance]. <br> | <table><tr><td colspan='2'>[[1nar]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Narbonne_vetch Narbonne vetch]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NAR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1NAR FirstGlance]. <br> | ||
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nar FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nar OCA], [http://pdbe.org/1nar PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1nar RCSB], [http://www.ebi.ac.uk/pdbsum/1nar PDBsum]</span></td></tr> | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nar FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nar OCA], [http://pdbe.org/1nar PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1nar RCSB], [http://www.ebi.ac.uk/pdbsum/1nar PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1nar ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
Revision as of 09:48, 29 November 2017
CRYSTAL STRUCTURE OF NARBONIN REFINED AT 1.8 ANGSTROMS RESOLUTIONCRYSTAL STRUCTURE OF NARBONIN REFINED AT 1.8 ANGSTROMS RESOLUTION
Structural highlights
Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. Publication Abstract from PubMedThe three-dimensional structure of narbonin, a seed protein from Vicia narbonensis L, has been determined at 1.8 A resolution. Phase information was obtained by multiple isomorphous replacement and optimized anomalous dispersion. The narbonin structure was initially traced with only 17% amino-acid sequence information and preliminarily refined to a crystallographic R-factor of 16.5%. It is now refined to 15.9% using full sequence information derived from cDNA and after the addition of more solvent molecules. The monomeric molecule of narbonin is an eight-stranded parallel beta-barrel surrounded by alpha-helices in a beta/alpha-topology similar to that first observed in triose phosphate isomerase. Differences exist in the N-terminal part of the polypeptide chain, where the first helix is replaced by a loop and the second beta-strand is followed by an additional antiparallel alpha-sheet placed parallel on top of alpha-helices alpha3 and alpha4. Two short additional secondary structures are present. The first, an alpha-helix, is situated between the seventh beta-strand and the following helix, and the second, which is a 3(10) helix, between the eighth strand and the C-terminal helix. The most striking observation is the lack of a known enzymatic function for narbonin, because all TIM-like structures known so far are enzymes. Crystal structure of narbonin at 1.8 A resolution.,Hennig M, Pfeffer-Hennig S, Dauter Z, Wilson KS, Schlesier B, Nong VH Acta Crystallogr D Biol Crystallogr. 1995 Mar 1;51(Pt 2):177-89. PMID:15299319[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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