2bps: Difference between revisions
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bps FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bps OCA], [http://www.ebi.ac.uk/pdbsum/2bps PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2bps RCSB]</span> | |||
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[[Category: yukd]] | [[Category: yukd]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:09:53 2008'' | ||
Revision as of 02:09, 31 March 2008
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
UBIQUITIN-LIKE PROTEIN YUKD OF BACILLUS SUBTILIS
OverviewOverview
The YukD protein in Bacillus subtilis was identified in a hidden Markov model (HMM) search as being related in sequence to ubiquitin. By solving the crystal structure we show that YukD adopts a fold that is most closely related to ubiquitin, yet has the shortest C-terminal tail of all known ubiquitin-like proteins. The endogenous gene of yukD in B. subtilis was disrupted without an obvious phenotypic effect and an inducible copy encoding a C-Myc and His-tagged version of the protein was introduced at the ectopic locus amyE. Conjugation assays performed both in vitro and in vivo indicate that YukD lacks the capacity for covalent bond formation with other proteins.
About this StructureAbout this Structure
2BPS is a Single protein structure of sequence from Bacillus subtilis. Full crystallographic information is available from OCA.
ReferenceReference
Crystal structure of the ubiquitin-like protein YukD from Bacillus subtilis., van den Ent F, Lowe J, FEBS Lett. 2005 Jul 4;579(17):3837-41. PMID:15978580
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