2bmq: Difference between revisions
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|PDB= 2bmq |SIZE=350|CAPTION= <scene name='initialview01'>2bmq</scene>, resolution 1.55Å | |PDB= 2bmq |SIZE=350|CAPTION= <scene name='initialview01'>2bmq</scene>, resolution 1.55Å | ||
|SITE= <scene name='pdbsite=AC1:Eoh+Binding+Site+For+Chain+B'>AC1</scene> | |SITE= <scene name='pdbsite=AC1:Eoh+Binding+Site+For+Chain+B'>AC1</scene> | ||
|LIGAND= <scene name='pdbligand= | |LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=NBZ:NITROBENZENE'>NBZ</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene> | ||
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
|DOMAIN= | |||
|RELATEDENTRY= | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bmq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bmq OCA], [http://www.ebi.ac.uk/pdbsum/2bmq PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2bmq RCSB]</span> | |||
}} | }} | ||
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[[Category: Ramaswamy, S.]] | [[Category: Ramaswamy, S.]] | ||
[[Category: Yu, C.]] | [[Category: Yu, C.]] | ||
[[Category: crystal structure]] | [[Category: crystal structure]] | ||
[[Category: metal-binding]] | [[Category: metal-binding]] | ||
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[[Category: substrate specificity iron-sulfur]] | [[Category: substrate specificity iron-sulfur]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:08:41 2008'' | ||
Revision as of 02:08, 31 March 2008
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| , resolution 1.55Å | |||||||
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| Ligands: | , , , , , | ||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
THE CRYSTAL STRUCTURE OF NITROBENZENE DIOXYGENASE IN COMPLEX WITH NITROBENZENE
OverviewOverview
Nitroaromatic compounds are used extensively in many industrial processes and have been released into the environment where they are considered environmental pollutants. Nitroaromatic compounds, in general, are resistant to oxidative attack due to the electron-withdrawing nature of the nitro groups and the stability of the benzene ring. However, the bacterium Comamonas sp. strain JS765 can grow with nitrobenzene as a sole source of carbon, nitrogen and energy. Biodegradation is initiated by the nitrobenzene dioxygenase (NBDO) system. We have determined the structure of NBDO, which has a hetero-hexameric structure similar to that of several other Rieske non-heme iron dioxygenases. The catalytic subunit contains a Rieske iron-sulfur center and an active-site mononuclear iron atom. The structures of complexes with substrates nitrobenzene and 3-nitrotoluene reveal the structural basis for its activity with nitroarenes. The substrate pocket contains an asparagine residue that forms a hydrogen bond to the nitro-group of the substrate, and orients the substrate in relation to the active-site mononuclear iron atom, positioning the molecule for oxidation at the nitro-substituted carbon.
About this StructureAbout this Structure
2BMQ is a Protein complex structure of sequences from Comamonas sp.. Full crystallographic information is available from OCA.
ReferenceReference
Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase., Friemann R, Ivkovic-Jensen MM, Lessner DJ, Yu CL, Gibson DT, Parales RE, Eklund H, Ramaswamy S, J Mol Biol. 2005 May 20;348(5):1139-51. Epub 2005 Apr 7. PMID:15854650
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