Ribosome 3D structures: Difference between revisions
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*30S subunit + RNA | *30S subunit + RNA | ||
**[[2zm6]], [[1n36]], [[1j5e]], [[3oto]] - Tt30S ribosomal subunit+THX+16S RRNA – Thermus | **[[2zm6]], [[1n36]], [[1j5e]], [[3oto]] - Tt30S ribosomal subunit+THX+16S RRNA – ''Thermus thermophilus''<br /> | ||
**[[2vqe]], [[2vqf]], [[2uuc]], 2e5l]], [[2uu9]], [[2uua]], [[2uub]] - Tt30S ribosomal subunit+16S RRNA+RNA fragment<br /> | **[[2vqe]], [[2vqf]], [[2uuc]], 2e5l]], [[2uu9]], [[2uua]], [[2uub]] - Tt30S ribosomal subunit+16S RRNA+RNA fragment<br /> | ||
**[[3i1m]], [[3i1o]], [[1i94]], [[1fka]], [[4dr1]] - Tt30S ribosomal subunit+16S RRNA<br /> | **[[3i1m]], [[3i1o]], [[1i94]], [[1fka]], [[4dr1]] - Tt30S ribosomal subunit+16S RRNA<br /> | ||
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**[[1ibk]] - Tt30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br /> | **[[1ibk]] - Tt30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br /> | ||
**[[2om7]] – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S RRNA fragment+23S RRNA fragment<br /> | **[[2om7]] – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S RRNA fragment+23S RRNA fragment<br /> | ||
**[[5u4j]] – EcRPS3+EcRPS4+EcRPS5 + EcRPS12 + P-site tRNA+16S RRNA +23S RRNA + mRNA + RF-2 – Cryo EM<br /> | |||
*30S subunit+A-site tRNA+P-site tRNA | *30S subunit+A-site tRNA+P-site tRNA | ||
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*30S subunit + ribosome recycling factor | *30S subunit + ribosome recycling factor | ||
**[[3r8n]], [[3r8o]] - Ec30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA - Escherichia coli <br /> | **[[3r8n]], [[3r8o]] - Ec30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA - ''Escherichia coli'' <br /> | ||
*30S subunit + elongation factor | *30S subunit + elongation factor | ||
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**[[4a2i]] - EcRPS2 + 16S RRNA + GTPase RSGA – Cryo EM<br /> | **[[4a2i]] - EcRPS2 + 16S RRNA + GTPase RSGA – Cryo EM<br /> | ||
**[[4adv]] - EcRPS2 + 16S RRNA + methyltransferase – Cryo EM<br /> | **[[4adv]] - EcRPS2 + 16S RRNA + methyltransferase – Cryo EM<br /> | ||
**[[5uz4]], [[5no3]], [[5no2]] - Ec30S ribosomal subunit+ BS6 + US7 + GTPase RsgA +16S RRNA – Cryo EM<br /> | |||
*40S ribosomal subunit | *40S ribosomal subunit | ||
**[[4v5o]] - Tet40S ribosomal subunit+RACK1 – Tetrahymena thermophila<br /> | **[[4v5o]] - Tet40S ribosomal subunit+RACK1 – ''Tetrahymena thermophila''<br /> | ||
**[[4kzx]] - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br /> | **[[4kzx]] - r40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br /> | ||
**[[4kzy]] - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br /> | **[[4kzy]] - r40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br /> | ||
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*50S subunit+RNA | *50S subunit+RNA | ||
**[[3kni]], [[3knk]], [[3knm]], [[3kno]], [[3v6w]], [[3v6x]], [[3zne]], [[4k0m]], [[4k0q]] | **[[3kni]], [[3knk]], [[3knm]], [[3kno]], [[3v6w]], [[3v6x]], [[3zne]], [[4k0m]], [[4k0q]] - Tt50S subunit+5S RRNA+23S RRNA <br /> | ||
**[[3i1n]], [[3i1p]] | **[[3i1n]], [[3i1p]] - Ec50S subunit+5S RRNA+23S RRNA <br /> | ||
**[[2zjq]], [[2zjr]], [[1nkw]] - Dr50S subunit+5S RRNA+23S RRNA – Deinococcus radiodurans<br /> | **[[2zjq]], [[2zjr]], [[1nkw]] - Dr50S subunit+5S RRNA+23S RRNA – ''Deinococcus radiodurans''<br /> | ||
**[[2qa4]], [[3cc2]], [[1s72]], [[4v9f]], [[1kqs]], 1qvg, [[1jj2]], [[1ffk]] - Hm50S subunit+5S RRNA+23S RRNA – Haloarcula marismortui<br /> | **[[2qa4]], [[3cc2]], [[1s72]], [[4v9f]], [[1kqs]], 1qvg, [[1jj2]], [[1ffk]] - Hm50S subunit+5S RRNA+23S RRNA – ''Haloarcula marismortui''<br /> | ||
**[[3cc7]], [[3cce]], [[3ccj]], [[3ccl]], [[3ccm]], [[3ccq]], [[3ccr]], [[3ccs]], [[3ccu]], [[3ccv]] - Hm50S subunit+5S RRNA+23S RRNA (mutant) <br /> | **[[3cc7]], [[3cce]], [[3ccj]], [[3ccl]], [[3ccm]], [[3ccq]], [[3ccr]], [[3ccs]], [[3ccu]], [[3ccv]] - Hm50S subunit+5S RRNA+23S RRNA (mutant) <br /> | ||
**[[1yj9]] - Hm50S subunit (mutant)+5S RRNA+23S RRNA <br /> | **[[1yj9]] - Hm50S subunit (mutant)+5S RRNA+23S RRNA <br /> | ||
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**[[1vq6]], [[1vqk]], [[1vqn]] – Hm50S subunit+5S RRNA+23S RRNA+ c-hpmn+CCA-Phe-caproic acid-biotin<br /> | **[[1vq6]], [[1vqk]], [[1vqn]] – Hm50S subunit+5S RRNA+23S RRNA+ c-hpmn+CCA-Phe-caproic acid-biotin<br /> | ||
**[[1vqo]] – Hm50S subunit+5S RRNA+23S RRNA+ CCPMN<br /> | **[[1vqo]] – Hm50S subunit+5S RRNA+23S RRNA+ CCPMN<br /> | ||
**[[3iy9]] – 50S subunit – Leishmania taretolae<br /> | **[[3iy9]] – 50S subunit – ''Leishmania taretolae''<br /> | ||
**[[2ftc]] – 50S subunit+5S RRNA+23S RRNA – bovine - Cryo_EM<br /> | **[[2ftc]] – 50S subunit+5S RRNA+23S RRNA – bovine - Cryo_EM<br /> | ||
**[[3j3v]], [[3j3w]] - 50S subunit+5S RRNA+23S RRNA – Bacillus subtilis<br /> | **[[3j3v]], [[3j3w]] - 50S subunit+5S RRNA+23S RRNA – ''Bacillus subtilis''<br /> | ||
*50S subunit + antibiotics | *50S subunit + antibiotics | ||
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**[[4v8t]] – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br /> | **[[4v8t]] – y60S subunit + P0 + P1 + P2 + ARX1 - Cryo EM<br /> | ||
**[[3o5h]] – y60S subunit + 5S RRNA + 5.8S RRNA + 25S RRNA + P0<br /> | **[[3o5h]] – y60S subunit + 5S RRNA + 5.8S RRNA + 25S RRNA + P0<br /> | ||
**[[5tzs]], [[5no4]] – y60S subunit processome – Cryo EM<br /> | |||
**[[5anc]], [[5anb]], [[5an9]] – 60S subunit + P0 + SbdS + EF-Tu – slime mold - Cryo EM<br /> | |||
**[[3j39]] – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM<br /> | **[[3j39]] – Dm60S subunit + P0 – Drosophila melanogaster - Cryo EM<br /> | ||
**[[3j3b]] – h60S subunit + P0 + P1 + P2 – human - Cryo EM<br /> | **[[3j3b]] – h60S subunit + P0 + P1 + P2 – human - Cryo EM<br /> | ||
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**[[4v65]] – EcRibosome pre-accomodation – Cryo-EM<br /> | **[[4v65]] – EcRibosome pre-accomodation – Cryo-EM<br /> | ||
**[[4v66]] – EcRibosome post-accomodation – Cryo-EM<br /> | **[[4v66]] – EcRibosome post-accomodation – Cryo-EM<br /> | ||
**[[4v61]] – sRibosome – spinach - Cryo-EM<br /> | **[[4v61]], [[5x8r]], [[5mlc]] – sRibosome – spinach - Cryo-EM<br /> | ||
**[[4v8m]] - TbRibosome – Trypanosoma brucei – Cryo-EM<br /> | **[[4v8m]] - TbRibosome – Trypanosoma brucei – Cryo-EM<br /> | ||
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**[[4v51]], [[4v5c]], [[4v5d]], [[4v7w]], [[4v7x]], [[4v7y]], [[4v7z]], [[4v8a]], [[4v9c]] – TtRibosome + antibiotic<br /> | **[[4v51]], [[4v5c]], [[4v5d]], [[4v7w]], [[4v7x]], [[4v7y]], [[4v7z]], [[4v8a]], [[4v9c]] – TtRibosome + antibiotic<br /> | ||
**[[4v8c]], [[4v8f]], [[4v9a]], [[4v9b]], [[4v9c]] – TtRibosome + mRNA + antibiotic<br /> | **[[4v8c]], [[4v8f]], [[4v9a]], [[4v9b]], [[4v9c]] – TtRibosome + mRNA + antibiotic<br /> | ||
**[[4v7l]], [[4v7m]] – Ribosome + antibiotic – Streptomyces puniceus<br /> | **[[4v7l]], [[4v7m]] – Ribosome + antibiotic – ''Streptomyces puniceus''<br /> | ||
*70S ribosome complex with release factor | *70S ribosome complex with release factor | ||
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*80S ribosome | *80S ribosome | ||
**[[4v6w]] - DmRibosome + elongation factor 2 + guanine nucleotide-binding protein | **[[4v6w]] - DmRibosome + elongation factor 2 + guanine nucleotide-binding protein – Cryo-EM<br /> | ||
**[[4v7r]], [[4v88]] – yRibosome <br /> | **[[4v7r]], [[4v88]] – yRibosome <br /> | ||
**[[4v6i]] – yRibosome - Cryo-EM<br /> | **[[4v6i]] – yRibosome - Cryo-EM<br /> | ||
**[[4v4b]] – yRibosome + elongation factor 2 + antifungal - Cryo-EM<br /> | **[[4v4b]] – yRibosome + elongation factor 2 + antifungal - Cryo-EM<br /> | ||
**[[4v7e]] – Ribosome – wheat - Cryo-EM<br /> | **[[4v7e]] – Ribosome – wheat - Cryo-EM<br /> | ||
**[[4v6x]] – | **[[4v6x]] – hRibosome - Cryo-EM<br /> | ||
**[[4v5z]] - dRibosome – Cryo-EM <br /> | **[[4v5z]] - dRibosome – Cryo-EM <br /> | ||
**[[3j0l]], [[3j0o]], [[3j0p]], [[3j0q]] - rRibosome+ mRNA – Cryo-EM <br /> | **[[3j0l]], [[3j0o]], [[3j0p]], [[3j0q]] - rRibosome+ mRNA – Cryo-EM <br /> | ||
**[[4v7h]] - TlRibosome+P-site tRNA – Thermomyces lanuginosus<br /> | **[[4v7h]] - TlRibosome+P-site tRNA – ''Thermomyces lanuginosus''<br /> | ||
*Mitochondrial ribosome (mitoribosome) | *Mitochondrial ribosome (mitoribosome) | ||
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**[[3j6b]] - y54S large subunit of the mitoribosome <br /> | **[[3j6b]] - y54S large subunit of the mitoribosome <br /> | ||
**[[3j6v]] - 28S small subunit of the mammalian mitoribosome - bovine<br /> | **[[3j6v]] - 28S small subunit of the mammalian mitoribosome - bovine<br /> | ||
*90S pre-ribosome | |||
**[[5jpq]] – pre-Ribosome – ''Chaetomium thermophilum'' - Cryo-EM<br /> | |||
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