1a16: Difference between revisions
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==AMINOPEPTIDASE P FROM E. COLI WITH THE INHIBITOR PRO-LEU== | ==AMINOPEPTIDASE P FROM E. COLI WITH THE INHIBITOR PRO-LEU== | ||
<StructureSection load='1a16' size='340' side='right' caption='[[1a16]], [[Resolution|resolution]] 2.30Å' scene=''> | <StructureSection load='1a16' size='340' side='right' caption='[[1a16]], [[Resolution|resolution]] 2.30Å' scene=''> | ||
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=LEU:LEUCINE'>LEU</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PRO:PROLINE'>PRO</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=LEU:LEUCINE'>LEU</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PRO:PROLINE'>PRO</scene></td></tr> | ||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xaa-Pro_aminopeptidase Xaa-Pro aminopeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.11.9 3.4.11.9] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xaa-Pro_aminopeptidase Xaa-Pro aminopeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.11.9 3.4.11.9] </span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1a16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a16 OCA], [http://pdbe.org/1a16 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1a16 RCSB], [http://www.ebi.ac.uk/pdbsum/1a16 PDBsum]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1a16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a16 OCA], [http://pdbe.org/1a16 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1a16 RCSB], [http://www.ebi.ac.uk/pdbsum/1a16 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1a16 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
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</div> | </div> | ||
<div class="pdbe-citations 1a16" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 1a16" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
Revision as of 13:34, 15 November 2017
AMINOPEPTIDASE P FROM E. COLI WITH THE INHIBITOR PRO-LEUAMINOPEPTIDASE P FROM E. COLI WITH THE INHIBITOR PRO-LEU
Structural highlights
Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. Publication Abstract from PubMedThe structure of the proline-specific aminopeptidase (EC 3.4.11.9) from Escherichia coli has been solved and refined for crystals of the native enzyme at a 2.0-A resolution, for a dipeptide-inhibited complex at 2.3-A resolution, and for a low-pH inactive form at 2.7-A resolution. The protein crystallizes as a tetramer, more correctly a dimer of dimers, at both high and low pH, consistent with observations from analytical ultracentrifuge studies that show that the protein is a tetramer under physiological conditions. The monomer folds into two domains. The active site, in the larger C-terminal domain, contains a dinuclear manganese center in which a bridging water molecule or hydroxide ion appears poised to act as the nucleophile in the attack on the scissile peptide bond of Xaa-Pro. The metal-binding residues are located in a single subunit, but the residues surrounding the active site are contributed by three subunits. The fold of the protein resembles that of creatine amidinohydrolase (creatinase, not a metalloenzyme). The C-terminal catalytic domain is also similar to the single-domain enzyme methionine aminopeptidase that has a dinuclear cobalt center. Structure and mechanism of a proline-specific aminopeptidase from Escherichia coli.,Wilce MC, Bond CS, Dixon NE, Freeman HC, Guss JM, Lilley PE, Wilce JA Proc Natl Acad Sci U S A. 1998 Mar 31;95(7):3472-7. PMID:9520390[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References |
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