4pg5: Difference between revisions
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<StructureSection load='4pg5' size='340' side='right' caption='[[4pg5]], [[Resolution|resolution]] 2.20Å' scene=''> | <StructureSection load='4pg5' size='340' side='right' caption='[[4pg5]], [[Resolution|resolution]] 2.20Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4pg5]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PG5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PG5 FirstGlance]. <br> | <table><tr><td colspan='2'>[[4pg5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_m1064 Staphylococcus aureus m1064]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PG5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PG5 FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4pg4|4pg4]], [[4pg6|4pg6]], [[4pg7|4pg7]], [[4pg8|4pg8]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4pg4|4pg4]], [[4pg6|4pg6]], [[4pg7|4pg7]], [[4pg8|4pg8]]</td></tr> | ||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">U5K_01898 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1158465 Staphylococcus aureus M1064])</td></tr> | |||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Homoserine_dehydrogenase Homoserine dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.3 1.1.1.3] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Homoserine_dehydrogenase Homoserine dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.3 1.1.1.3] </span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pg5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pg5 OCA], [http://pdbe.org/4pg5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4pg5 RCSB], [http://www.ebi.ac.uk/pdbsum/4pg5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4pg5 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pg5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pg5 OCA], [http://pdbe.org/4pg5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4pg5 RCSB], [http://www.ebi.ac.uk/pdbsum/4pg5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4pg5 ProSAT]</span></td></tr> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Homoserine dehydrogenase]] | [[Category: Homoserine dehydrogenase]] | ||
[[Category: Staphylococcus aureus m1064]] | |||
[[Category: Gopal, B]] | [[Category: Gopal, B]] | ||
[[Category: Navratna, V]] | [[Category: Navratna, V]] | ||
Revision as of 15:00, 6 November 2017
Crystal structure of S. aureus Homoserine Dehydrogenase at pH6.5Crystal structure of S. aureus Homoserine Dehydrogenase at pH6.5
Structural highlights
Publication Abstract from PubMedHomoserine dehydrogenase (HSD) is an oxidoreductase in the aspartic acid pathway. This enzyme coordinates a critical branch point of the metabolic pathway that leads to the synthesis of bacterial cell-wall components such as L-lysine and m-DAP in addition to other amino acids such as L-threonine, L-methionine and L-isoleucine. Here, a structural rationale for the hydride-transfer step in the reaction mechanism of HSD is reported. The structure of Staphylococcus aureus HSD was determined at different pH conditions to understand the basis for the enhanced enzymatic activity at basic pH. An analysis of the crystal structure revealed that Lys105, which is located at the interface of the catalytic and cofactor-binding sites, could mediate the hydride-transfer step of the reaction mechanism. The role of Lys105 was subsequently confirmed by mutational analysis. Put together, these studies reveal the role of conserved water molecules and a lysine residue in hydride transfer between the substrate and the cofactor. Structural basis for the catalytic mechanism of homoserine dehydrogenase.,Navratna V, Reddy G, Gopal B Acta Crystallogr D Biol Crystallogr. 2015 May;71(Pt 5):1216-25. doi:, 10.1107/S1399004715004617. Epub 2015 Apr 30. PMID:25945586[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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