1zi9: Difference between revisions
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|PDB= 1zi9 |SIZE=350|CAPTION= <scene name='initialview01'>1zi9</scene>, resolution 1.50Å | |PDB= 1zi9 |SIZE=350|CAPTION= <scene name='initialview01'>1zi9</scene>, resolution 1.50Å | ||
|SITE= | |SITE= | ||
|LIGAND= <scene name='pdbligand= | |LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene> | ||
|ACTIVITY= [http://en.wikipedia.org/wiki/Carboxymethylenebutenolidase Carboxymethylenebutenolidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.45 3.1.1.45] | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Carboxymethylenebutenolidase Carboxymethylenebutenolidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.45 3.1.1.45] </span> | ||
|GENE= clcD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=303 Pseudomonas putida]) | |GENE= clcD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=303 Pseudomonas putida]) | ||
|DOMAIN= | |||
|RELATEDENTRY=[[1din|1DIN]], [[1ggv|1GGV]], [[1zi6|1ZI6]], [[1zi8|1ZI8]], [[1zic|1ZIC]], [[1zix|1ZIX]], [[1ziy|1ZIY]], [[1zj4|1ZJ4]], [[1zj5|1ZJ5]] | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zi9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zi9 OCA], [http://www.ebi.ac.uk/pdbsum/1zi9 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1zi9 RCSB]</span> | |||
}} | }} | ||
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[[Category: Liu, J W.]] | [[Category: Liu, J W.]] | ||
[[Category: Ollis, D L.]] | [[Category: Ollis, D L.]] | ||
[[Category: 3-d structure]] | [[Category: 3-d structure]] | ||
[[Category: alpha and beta protein]] | [[Category: alpha and beta protein]] | ||
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[[Category: serine esterase]] | [[Category: serine esterase]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:37:00 2008'' | ||
Revision as of 01:37, 31 March 2008
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| , resolution 1.50Å | |||||||
|---|---|---|---|---|---|---|---|
| Ligands: | , | ||||||
| Gene: | clcD (Pseudomonas putida) | ||||||
| Activity: | Carboxymethylenebutenolidase, with EC number 3.1.1.45 | ||||||
| Related: | 1DIN, 1GGV, 1ZI6, 1ZI8, 1ZIC, 1ZIX, 1ZIY, 1ZJ4, 1ZJ5
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||
Crystal Structure Analysis of the dienelactone hydrolase (E36D, C123S) mutant- 1.5 A
OverviewOverview
The enzyme dienelactone hydrolase (DLH) has undergone directed evolution to produce a series of mutant proteins that have enhanced activity towards the non-physiological substrates alpha-naphthyl acetate and p-nitrophenyl acetate. In terms of steady-state kinetics, the mutations caused a drop in the K(m) for the hydrolysis reaction with these two substrates. For the best mutant, there was a 5.6-fold increase in k(cat)/K(m) for the hydrolysis of alpha-naphthyl acetate and a 3.6-fold increase was observed for p-nitrophenyl acetate. For alpha-naphthyl acetate the pre-steady-state kinetics revealed that the rate constant for the formation of the covalent intermediate had increased. The mutations responsible for the rate enhancements map to the active site. The structures of the starting and mutated proteins revealed small changes in the protein owing to the mutations, while the structures of the same proteins with an inhibitor co-crystallized in the active site indicated that the mutations caused significant changes in the way the mutated proteins recognized the substrates. Within the active site of the mutant proteins, the inhibitor was rotated by about 180 degrees with respect to the orientation found in the starting enzyme. This rotation of the inhibitor caused the displacement of a large section of a loop on one side of the active site. Residues that could stabilize the transition state for the reaction were identified.
About this StructureAbout this Structure
1ZI9 is a Single protein structure of sequence from Pseudomonas putida. Full crystallographic information is available from OCA.
ReferenceReference
Following directed evolution with crystallography: structural changes observed in changing the substrate specificity of dienelactone hydrolase., Kim HK, Liu JW, Carr PD, Ollis DL, Acta Crystallogr D Biol Crystallogr. 2005 Jul;61(Pt 7):920-31. Epub 2005, Jun 24. PMID:15983415
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