3dip: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
Line 1: Line 1:
==Crystal structure of an enolase protein from the environmental genome shotgun sequencing of the Sargasso Sea==
==Crystal structure of an enolase protein from the environmental genome shotgun sequencing of the Sargasso Sea==
<StructureSection load='3dip' size='340' side='right' caption='[[3dip]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
<StructureSection load='3dip' size='340' side='right' caption='[[3dip]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
Line 5: Line 6:
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SIC:(2R)-2-[(3S)-3-AMINO-2,5-DIOXOPYRROLIDIN-1-YL]-3-SULFANYLPROPANOIC+ACID'>SIC</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SIC:(2R)-2-[(3S)-3-AMINO-2,5-DIOXOPYRROLIDIN-1-YL]-3-SULFANYLPROPANOIC+ACID'>SIC</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dip FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dip OCA], [http://pdbe.org/3dip PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dip RCSB], [http://www.ebi.ac.uk/pdbsum/3dip PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3dip TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dip FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dip OCA], [http://pdbe.org/3dip PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dip RCSB], [http://www.ebi.ac.uk/pdbsum/3dip PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dip ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3dip TOPSAN]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 17: Line 18:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dip ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dip ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
==See Also==
*[[Enolase|Enolase]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>

Revision as of 11:51, 25 October 2017

Crystal structure of an enolase protein from the environmental genome shotgun sequencing of the Sargasso SeaCrystal structure of an enolase protein from the environmental genome shotgun sequencing of the Sargasso Sea

Structural highlights

3dip is a 2 chain structure with sequence from Miscellaneous nucleic acid. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
NonStd Res:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3dip, resolution 2.50Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA