1npy: Difference between revisions
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==Structure of shikimate 5-dehydrogenase-like protein HI0607== | ==Structure of shikimate 5-dehydrogenase-like protein HI0607== | ||
<StructureSection load='1npy' size='340' side='right' caption='[[1npy]], [[Resolution|resolution]] 1.75Å' scene=''> | <StructureSection load='1npy' size='340' side='right' caption='[[1npy]], [[Resolution|resolution]] 1.75Å' scene=''> | ||
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr> | ||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HI0607 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=727 "Bacterium influenzae" Lehmann and Neumann 1896])</td></tr> | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HI0607 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=727 "Bacterium influenzae" Lehmann and Neumann 1896])</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1npy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1npy OCA], [http://pdbe.org/1npy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1npy RCSB], [http://www.ebi.ac.uk/pdbsum/1npy PDBsum], [http://www.topsan.org/Proteins/MCSG/1npy TOPSAN]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1npy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1npy OCA], [http://pdbe.org/1npy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1npy RCSB], [http://www.ebi.ac.uk/pdbsum/1npy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1npy ProSAT], [http://www.topsan.org/Proteins/MCSG/1npy TOPSAN]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
Revision as of 13:11, 12 October 2017
Structure of shikimate 5-dehydrogenase-like protein HI0607Structure of shikimate 5-dehydrogenase-like protein HI0607
Structural highlights
Function[Y607_HAEIN] The physiological substrate is not known. Has much lower activity towards shikimate than AroE. Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. Publication Abstract from PubMedTo date two classes of shikimate dehydrogenases have been identified and characterized, YdiB and AroE. YdiB is a bifunctional enzyme that catalyzes the reversible reductions of dehydroquinate to quinate and dehydroshikimate to shikimate in the presence of either NADH or NADPH. In contrast, AroE catalyzes the reversible reduction of dehydroshikimate to shikimate in the presence of NADPH. Here we report the crystal structure and biochemical characterization of HI0607, a novel class of shikimate dehydrogenase annotated as shikimate dehydrogenase-like. The kinetic properties of HI0607 are remarkably different from those of AroE and YdiB. In comparison with YdiB, HI0607 catalyzes the oxidation of shikimate but not quinate. The turnover rate for the oxidation of shikimate is approximately 1000-fold lower compared with that of AroE. Phylogenetic analysis reveals three independent clusters representing three classes of shikimate dehydrogenases, namely AroE, YdiB, and this newly characterized shikimate dehydrogenase-like protein. In addition, mutagenesis studies of two invariant residues, Asp-103 and Lys-67, indicate that they are important catalytic groups that may function as a catalytic pair in the shikimate dehydrogenase reaction. This is the first study that describes the crystal structure as well as mutagenesis and mechanistic analysis of this new class of shikimate dehydrogenase. Crystal structure of a novel shikimate dehydrogenase from Haemophilus influenzae.,Singh S, Korolev S, Koroleva O, Zarembinski T, Collart F, Joachimiak A, Christendat D J Biol Chem. 2005 Apr 29;280(17):17101-8. Epub 2005 Feb 25. PMID:15735308[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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