1gki: Difference between revisions
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==Plasmid coupling protein TrwB in complex with ADP and Mg2+.== | |||
<StructureSection load='1gki' size='340' side='right' caption='[[1gki]], [[Resolution|resolution]] 3.00Å' scene=''> | <StructureSection load='1gki' size='340' side='right' caption='[[1gki]], [[Resolution|resolution]] 3.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[1gki]] is a 6 chain structure | <table><tr><td colspan='2'>[[1gki]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GKI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GKI FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1e9r|1e9r]], [[1e9s|1e9s]], [[1gl6|1gl6]], [[1gl7|1gl7]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1e9r|1e9r]], [[1e9s|1e9s]], [[1gl6|1gl6]], [[1gl7|1gl7]]</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gki FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gki OCA], [http://pdbe.org/1gki PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gki RCSB], [http://www.ebi.ac.uk/pdbsum/1gki PDBsum]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gki FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gki OCA], [http://pdbe.org/1gki PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gki RCSB], [http://www.ebi.ac.uk/pdbsum/1gki PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1gki ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
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<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gki ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Coll, M]] | [[Category: Coll, M]] | ||
[[Category: Gomis-Ruth, F X]] | [[Category: Gomis-Ruth, F X]] | ||
[[Category: Moncalian, G]] | [[Category: Moncalian, G]] | ||
[[Category: Cruz, F De La]] | |||
[[Category: Bacterial conjugation]] | [[Category: Bacterial conjugation]] | ||
[[Category: Coupling protein]] | [[Category: Coupling protein]] | ||
[[Category: F1-atpase-like quaternary structure]] | [[Category: F1-atpase-like quaternary structure]] | ||
[[Category: Ring helicase]] | [[Category: Ring helicase]] | ||
Revision as of 07:35, 21 September 2017
Plasmid coupling protein TrwB in complex with ADP and Mg2+.Plasmid coupling protein TrwB in complex with ADP and Mg2+.
Structural highlights
Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. Publication Abstract from PubMedThe transfer of DNA across membranes and between cells is a central biological process; however, its molecular mechanism remains unknown. In prokaryotes, trans-membrane passage by bacterial conjugation, is the main route for horizontal gene transfer. It is the means for rapid acquisition of new genetic information, including antibiotic resistance by pathogens. Trans-kingdom gene transfer from bacteria to plants or fungi and even bacterial sporulation are special cases of conjugation. An integral membrane DNA-binding protein, called TrwB in the Escherichia coli R388 conjugative system, is essential for the conjugation process. This large multimeric protein is responsible for recruiting the relaxosome DNA-protein complex, and participates in the transfer of a single DNA strand during cell mating. Here we report the three-dimensional structure of a soluble variant of TrwB. The molecule consists of two domains: a nucleotide-binding domain of alpha/beta topology, reminiscent of RecA and DNA ring helicases, and an all-alpha domain. Six equivalent protein monomers associate to form an almost spherical quaternary structure that is strikingly similar to F1-ATPase. A central channel, 20 A in width, traverses the hexamer. The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase.,Gomis-Ruth FX, Moncalian G, Perez-Luque R, Gonzalez A, Cabezon E, de la Cruz F, Coll M Nature. 2001 Feb 1;409(6820):637-41. PMID:11214325[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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