Proteopedia

Nitrite reductase: Difference between revisions

← Older editNewer edit →
Jaime Prilusky (talk | contribs)
ConfirmAccount, Editor, Journal, Mutation, Next, Print3D, Tester, any2jmol, Bureaucrats, Administrators
7,875 edits
m Nitric reductase moved to Nitrite reductase over redirect: requested by Editor
Michal Harel (talk | contribs)
31,761 edits
No edit summary
Line 40: Line 40:
</StructureSection>
</StructureSection>


==3D structures of nitric reductase==
==3D structures of nitrite reductase==


Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Line 47: Line 47:
*'''Cu-containing nitrite reductase with copper only'''
*'''Cu-containing nitrite reductase with copper only'''


**[[1nia]], [[1nib]], [[1nic]], [[1nid]], [[1nie]], [[1nif]], [[2nrd]], [[1kcb]], [[1rzp]], [[1rzq]], [[2bw4]], [[2bw5]], [[2avf]] – AcNIR + Cu – ''Achromobacter cycloclastes''<br />
**[[1nia]], [[1nib]], [[1nic]], [[1nid]], [[1nie]], [[1nif]], [[2nrd]], [[1kcb]], [[1rzp]], [[1rzq]], [[2bw4]], [[2bw5]], [[2avf]], [[5l6k]], [[5i6l]], [[5l6m]], [[5i6n]], [[5l6o]], [[5i6p]], [[5n8f]], [[5n8g]], [[5n8h]], [[5n8i]]    – AcNIR + Cu – ''Achromobacter cycloclastes''<br />
**[[2afn]], [[1aq8]], [[1as7]], [[2fjs]], [[2pp7]], [[2pp8]], [[3h4h]], [[3h56]] - AfNIR + Cu – ''Alcaligenes faecalis''<br />
**[[2afn]], [[1aq8]], [[1as7]], [[2fjs]], [[2pp7]], [[2pp8]], [[3h4h]], [[3h56]], [[4ysc]], [[4yse]], [[5d4h]], [[5d4i]], [[5d4j]], [[5f7a]], [[5f7b]]  - AfNIR + Cu – ''Alcaligenes faecalis''<br />
**[[1ntd]], [[1npj]], [[1npn]], [[1zdq]], [[3h4f]] - AfNIR (mutant) + Cu<br />
**[[1ntd]], [[1npj]], [[1npn]], [[1zdq]], [[3h4f]] - AfNIR (mutant) + Cu<br />
**[[1ndr]], [[1ndt]], [[1bq5]], [[1hau]], [[1haw]], [[1oe1]], [[1oe3]] - AxNIR + Cu – ''Achromobacter xylosoxidans''<br />
**[[1ndr]], [[1ndt]], [[1bq5]], [[1hau]], [[1haw]], [[1oe1]], [[1oe3]], [[5b1k]] - AxNIR + Cu – ''Achromobacter xylosoxidans''<br />
**[[1oe2]], [[2jfc]] - AxNIR (mutant) + Cu<br />
**[[1oe2]], [[2jfc]] - AxNIR (mutant) + Cu<br />
**[[1mzz]], [[2dy2]] - RsNIR + Cu – ''Rhodobacter sphaeroides''<br />
**[[1mzz]], [[2dy2]] - RsNIR + Cu – ''Rhodobacter sphaeroides''<br />
**[[2dv6]] - NIR + Cu – Hyphomicrobium denitrificans<br />
**[[2dv6]] - NIR + Cu – ''Hyphomicrobium denitrificans''<br />
**[[3wia]] - GkNIR + Cu – ''Geobacillus kaustophilus''''Italic text''<br />
**[[3wkq]], [[3x1e]], [[4ysa]], [[4ysd]], [[4yso]], [[4ysp]], [[4ysr]], [[4yss]], [[4yst]], [[4ysu]], [[4zk8]] - GtNIR + Cu - ''Geobacillus thermodentntrificans''<br />
**[[3x1f]], [[3x1g]] - GtNIR (mutant) + Cu <br />
**[[5tb7]], [[5ue6]] - NIR + Cu – ''Neisseria gonorrhoeae''<br />


*Cu-containing nitrite reductase with variety of metals
*Cu-containing nitrite reductase with variety of metals
Line 67: Line 71:
**[[1mzy]], [[1zv2]], [[2a3t]] - RsNIR + Mg + Cu<br />  
**[[1mzy]], [[1zv2]], [[2a3t]] - RsNIR + Mg + Cu<br />  
**[[1n70]] - RsNIR (mutant) + Mg + Cu<br />
**[[1n70]] - RsNIR (mutant) + Mg + Cu<br />
**[[3wi9]] - GkNIR + Zn + Cu <br />


*Cu-containing nitrite reductase binary complex
*Cu-containing nitrite reductase binary complex
Line 83: Line 88:
**[[2xwz]] - AxNIR + NO + NO2 + Cu<br />
**[[2xwz]] - AxNIR + NO + NO2 + Cu<br />
**[[1wa2]] - AxNIR (mutant) + NO2 + Zn + Cu<br />
**[[1wa2]] - AxNIR (mutant) + NO2 + Zn + Cu<br />
**[[5b1j]] - AxNIR + pseudoazurin + Cu <br />
**[[2bwd]], [[2bwi]] - AcNIR + NO2 + Cu<br />
**[[2bwd]], [[2bwi]] - AcNIR + NO2 + Cu<br />
**[[2y1a]] - AcNIR + NO + Cu<br />
**[[2y1a]] - AcNIR + NO + Cu<br />
**[[2dws]], [[2dwt]] - RsNIR + NO2 + Cu<br />
**[[2dws]], [[2dwt]] - RsNIR + NO2 + Cu<br />
**[[3wkp]], [[3x1n]] - GtNIR (mutant) + NO2 + Cu <br />
**[[3wni]], [[3wnj]] - GtNIR + O2 + Cu <br />


*'''Heme-containing nitrite reductase - (Cytochrome C-552)'''
*'''Heme-containing nitrite reductase - (Cytochrome C-552)'''
Line 102: Line 110:
**[[1oah]] – NIR – ''Desulfovibrio desulfuricans''<br />
**[[1oah]] – NIR – ''Desulfovibrio desulfuricans''<br />
**[[2j7a]] - DvNIR – ''Desulfovibrio vulgaris''<br />
**[[2j7a]] - DvNIR – ''Desulfovibrio vulgaris''<br />
**[[2ot4]], [[3gm6]], [[3fo3]], [[3sce]], [[3uu9]] - TnNIR – ''Thioalkalivibrio nitratireducens''<br />
**[[2ot4]], [[3gm6]], [[3fo3]], [[3sce]], [[3uu9]], [[4q0t]], [[4q17]], [[4q1o]], [[4q4u]], [[4q5b]], [[4q5c]] - TnNIR – ''Thioalkalivibrio nitratireducens''<br />
**[[3m97]] – PdNIR soluble domain – ''Paracoccus denitrificans''<br />
**[[3m97]] – PdNIR soluble domain – ''Paracoccus denitrificans''<br />
**[[2ai5]] – HtNIR – ''Hydrogenophilus thermophilus'' – NMR<BR />
**[[2ai5]] – HtNIR – ''Hydrogenophilus thermophilus'' – NMR<BR />
Line 113: Line 121:
**[[1cno]] – NIR – ''Pseudomonas nautica''<br />
**[[1cno]] – NIR – ''Pseudomonas nautica''<br />
**[[3ubr]] – SoNIR – ''Shewanella oneidensis''<br />
**[[3ubr]] – SoNIR – ''Shewanella oneidensis''<br />
**[[3sqx]] – NIR – ''Thioalkalivibrio paradoxus''<br />


*Heme-containing nitrite reductase binary complex
*Heme-containing nitrite reductase binary complex
Line 125: Line 134:
**[[2yqb]], [[3zbm]] – RpNIR (mutant) + Cu <br />
**[[2yqb]], [[3zbm]] – RpNIR (mutant) + Cu <br />
**[[3o0r]] – PaNIR + antibody<br />
**[[3o0r]] – PaNIR + antibody<br />
**[[5guw]] – PaNIR + nitric oxide reductase<br />


*Heme-containing nitrite reductase binary complex with cyanide
*Heme-containing nitrite reductase binary complex with cyanide
Line 130: Line 140:
**[[1h9y]] - PpNIR + CN<br />
**[[1h9y]] - PpNIR + CN<br />
**[[1gjq]] - PaNIR + CN<br />
**[[1gjq]] - PaNIR + CN<br />
**[[1e2r]] - NIR + CN – ''Paracoccus denitrificans''<br />
**[[1e2r]] - PdNIR+ CN <br />


*Heme-containing nitrite reductase binary complex with nitric oxide
*Heme-containing nitrite reductase binary complex with nitric oxide
Line 142: Line 152:
**[[2e80]] - WsNIR + NO2<br />
**[[2e80]] - WsNIR + NO2<br />
**[[3bnh]] - WsNIR (mutant) + NO<br />
**[[3bnh]] - WsNIR (mutant) + NO<br />
**[[3d1i]], [[3rkh]], [[3owm]] - TnNIR + NO2
**[[3d1i]], [[3rkh]], [[3owm]], [[4l38]], [[4l3x]], [[4l3y]], [[4l3z]] - TnNIR + NO2


*Heme-containing nitrite reductase binary complex with azide
*Heme-containing nitrite reductase binary complex with azide
Line 157: Line 167:
**[[3l1t]] - EcNIR + SO3<BR />
**[[3l1t]] - EcNIR + SO3<BR />


*'''Siroheme-containing nitrite reductase'''  
*'''Siroheme-containing assimilatory nitrite reductase'''  


**[[2akj]] - NIR – spinach<br />
**[[2akj]] - NIR + S4Fe4 + siroheme – spinach<br />
**[[3b0g]], [[3b0h]] - ToNIR – tobacco<br />
**[[3b0g]], [[3b0h]] - ToNIR + S4Fe4 + siroheme – tobacco<br />
**[[3b0j]], [[3b0l]], [[3b0m]], [[3b0n]] - ToNIR (mutant)
**[[3b0j]], [[3b0l]], [[3b0m]], [[3b0n]], [[3vlx]], [[3vly]], [[3vlz]]  - ToNIR (mutant) + S4Fe4 + siroheme <br />
**[[3vkp]], [[3vkq]], [[3vkr]] – SToNIR + S4Fe4 + siroheme + NO2<br />
**[[3vm0]] – SToNIR (mutant) + S4Fe4 + siroheme + NO2<br />
**[[3vm1]] – SToNIR (mutant) + S4Fe4 + siroheme + HCO3<br />
**[[3vks]] – SToNIR + S4Fe4 + siroheme + NO<br />
**[[3vkt]] – SToNIR + S4Fe4 + siroheme + NH2OH<br />
}}
}}
'''References'''
'''References'''
<references/>
<references/>
[[Category:Topic Page]]
[[Category:Topic Page]]

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Jaime Prilusky
Retrieved from "https://proteopedia.openfox.io/w/Nitrite_reductase"