Proteopedia:Wishlist: Difference between revisions

Eric Martz (talk | contribs)
Angel Herraez (talk | contribs)
assembly vs. asymmetric unit implemented
Line 14: Line 14:


* '''A form for reserving a block of ''Sandbox Reserved NN'' pages''' would be a great help to educators who have their students create content in [[Sandboxes|sandbox pages]]. [[User:Eric Martz|Eric Martz]] 21:24, 31 January 2010 (IST) (after discussion with Jaime Prilusky) <font color="brown">A mechanism now exists for creating a block of ''Sandbox Reserved'' pages. Contact {{Template:Contact}} to arrange this.</font> The [[Special:SandboxReservation]] form needs to be linked into all relevant pages.
* '''A form for reserving a block of ''Sandbox Reserved NN'' pages''' would be a great help to educators who have their students create content in [[Sandboxes|sandbox pages]]. [[User:Eric Martz|Eric Martz]] 21:24, 31 January 2010 (IST) (after discussion with Jaime Prilusky) <font color="brown">A mechanism now exists for creating a block of ''Sandbox Reserved'' pages. Contact {{Template:Contact}} to arrange this.</font> The [[Special:SandboxReservation]] form needs to be linked into all relevant pages.
* '''Biological units''' (from RCSB) should be the default initial scenes, with a view of the asymmetric unit optional, as agreed in discussion. Eric Martz plans to provide a mock-up of an advanced page that would have views from EBI PQS, EBI PISA, and RCSB biological units, with brief explanations of each.


* '''Shorten the <i>Related Entries</i> List''': In a seeded page, e.g. [[1h6m]], when there are more than 30 related entries, make the division scrollable at 5 lines, instead of letting it push other important sections out of view. (This can be done with overflow: auto; in the style for the division.)
* '''Shorten the <i>Related Entries</i> List''': In a seeded page, e.g. [[1h6m]], when there are more than 30 related entries, make the division scrollable at 5 lines, instead of letting it push other important sections out of view. (This can be done with overflow: auto; in the style for the division.)
Line 51: Line 49:


===Items Solved===
===Items Solved===
* <span style="background-color:yellow;color:green">'''SOLVED:'''</span>  '''Biological units''' (from RCSB) should be the default initial scenes, with a view of the asymmetric unit optional, as agreed in discussion. Eric Martz plans to provide a mock-up of an advanced page that would have views from EBI PQS, EBI PISA, and RCSB biological units, with brief explanations of each.
:<span style="color:brown;">'''SOLUTION:'''</span> Default in seeded pages is the ''preferred assembly'', i.e. biological assembly, from PDBe (but stored in Proteopedia server). If not available, the classical PDB entry will be displayed, which should be asymmetric unit. Below the JSmol the type of currently displayed model is identified and, if both are available, there are radio buttons to switch between them.  [[User:Angel Herraez|Angel_Herraez]] 08:35, 17 June 2017 (UTC)
* <span style="background-color:yellow;color:green">'''SOLVED:'''</span> '''Searching''' for a '''plural''' should find the '''singular''' match, and vice versa. For example: I searched for "histocompatibility antigens" and did not find the page "Category: Histocompatibility antigen". Searching for "histocompatibility antigen" did find this page. [[User:Emartz|Emartz]] 19:00, 8 March 2008 (IST) In contrast, searching for "theoretical model" does find [[Theoretical models]]. [[User:Eric Martz|Eric Martz]] 20:42, 16 November 2009 (IST) <font color="brown">This appears to have been solved. See the examples at [[Help:Searching#Advantages_of_the_wiki_search_box]].</font> [[User:Eric Martz|Eric Martz]] 00:55, 9 November 2011 (IST)
* <span style="background-color:yellow;color:green">'''SOLVED:'''</span> '''Searching''' for a '''plural''' should find the '''singular''' match, and vice versa. For example: I searched for "histocompatibility antigens" and did not find the page "Category: Histocompatibility antigen". Searching for "histocompatibility antigen" did find this page. [[User:Emartz|Emartz]] 19:00, 8 March 2008 (IST) In contrast, searching for "theoretical model" does find [[Theoretical models]]. [[User:Eric Martz|Eric Martz]] 20:42, 16 November 2009 (IST) <font color="brown">This appears to have been solved. See the examples at [[Help:Searching#Advantages_of_the_wiki_search_box]].</font> [[User:Eric Martz|Eric Martz]] 00:55, 9 November 2011 (IST)


Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Eran Hodis, Eric Martz, Emily Forschler, Kevin Karplus, Jaime Prilusky, Greg Black, Ralf Stephan, Karl Oberholser, Angel Herraez, Karsten Theis