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Glyceraldehyde-3-Phosphate Dehydrogenase: Difference between revisions

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**[[1vsu]] – CpGAPDH – ''Cryptosporidium parvum''<br />
**[[1vsu]] – CpGAPDH – ''Cryptosporidium parvum''<br />
**[[1dc5]] - EcGAPDH – ''Escherichia coli''<br />
**[[1dc5]], [[1s7c]] - EcGAPDH – ''Escherichia coli''<br />
**[[1euh]], [[1qi6]] - SmGAPDH – ''Streptococcus mutans''<br />
**[[1euh]], [[1qi6]] - SmGAPDH – ''Streptococcus mutans''<br />
**[[5m6d]] - GAPDH – ''Streptococcus pneumoniae''<br />
**[[2hki]] – sGAPDH – spinach<br />
**[[2hki]] – sGAPDH – spinach<br />
**[[3e6a]] – RiGAPDH ligand binding domain – rice<br />
**[[3e6a]] – RiGAPDH ligand binding domain – rice<br />
**[[3lc7]] - SaGAPDH – ''Staphylococcus aureus''<br />
**[[3lc7]], [[5t73]] - SaGAPDH – ''Staphylococcus aureus''<br />
**[[3pqa]] – MjGAPDH – ''Methanocaldococcus jannaschii''<br />
**[[3pqa]] – MjGAPDH – ''Methanocaldococcus jannaschii''<br />
**[[3prl]] – BhGAPDH – ''Bacillus halodurans''<br />
**[[3prl]] – BhGAPDH – ''Bacillus halodurans''<br />
**[[5c7i]] - mGAPDH – mouse<br />
**[[5c7l]] - hGAPDH – human<br />
**[[4iq8]] - GAPDH – yeast<br />
**[[4gpd]], [[1crw]] – AlGAPDH – American lobster<br />
**[[4dib]] – GAPDH – ''Bacillus anthracis''<br />
**[[2gd1]] – GsGAPDH – ''Geobacillus stearothermophilus''<br />
**[[1obf]] – GAPDH – ''Achromobacter xylosoxidans''<br />
**[[1b7g]] - GAPDH – ''Sulfolobus solfataricus''<br />


*NAD-dependent GAPDH with cofactor NAD
*NAD-dependent GAPDH with cofactor NAD


**[[1vsv]] – CpGAPDH + NAD<br />
**[[1vsv]], [[3cps]] – CpGAPDH + NAD<br />
**[[1gpd]] – GAPDH + NAD – American lobster<br />
**[[1gpd]], [[1szj]], [[1dss]]  – AlGAPDH + NAD – American lobster<br />
**[[3gpd]], [[1znq]], [[1u8f]] - GAPDH + NAD – human<br />
**[[3gpd]], [[1znq]], [[1u8f]], [[5c7o]], [[4wnc]], [[3pfw]] - GAPDH + NAD <br />
**[[4wni]] - hGAPDH (mutant) + NAD<br />
**[[2vyn]], [[2vyv]] - GAPDH + NAD - rat<br />
**[[2vyn]], [[2vyv]] - GAPDH + NAD - rat<br />
**[[1gd1]], [[3cmc]] – GsGAPDH + NAD – ''Geobacillus stearothermophilus''<br />
**[[1gd1]], [[3cmc]] – GsGAPDH + NAD – ''Geobacillus stearothermophilus''<br />
**[[1dbv]], [[3dbv]] - GsGAPDH (mutant) + NAD<br />
**[[1dbv]], [[3dbv]], [[1nq5]], [[1npt]] - GsGAPDH (mutant) + NAD<br />
**[[1hdg]] - GAPDH + NAD – ''Thermotoga maritima''<br />
**[[1hdg]] - GAPDH + NAD – ''Thermotoga maritima''<br />
**[[1gyp]], [[1a7k]] - GAPDH + NAD – ''Leishmania mexicana''<br />
**[[1gyp]], [[1a7k]] - LmGAPDH + NAD – ''Leishmania mexicana''<br />
**[[1gyq]] - LmGAPDH + benzyl-NAD<br />
**[[1gyq]] - LmGAPDH + benzyl-NAD<br />
**[[1cer]], [[2g82]] - GAPDH + NAD – ''Thermus aquaticus''<br />
**[[1cer]], [[2g82]] - GAPDH + NAD – ''Thermus aquaticus''<br />
**[[1gad]], [[1dc6]] - EcGAPDH + NAD<br />
**[[1gad]], [[1dc6]], [[4mvj]] - EcGAPDH + NAD<br />
**[[1gae]] - EcGAPDH (mutant) + NAD<br />
**[[1gae]] - EcGAPDH (mutant) + NAD<br />
**[[2ep7]] – GAPDH + NAD – ''Aquifex aeolicus''<br />
**[[2ep7]] – GAPDH + NAD – ''Aquifex aeolicus''<br />
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**[[3gnq]] - GAPDH + NAD – ''Burkholderia pseudomallei''<br />
**[[3gnq]] - GAPDH + NAD – ''Burkholderia pseudomallei''<br />
**[[3hja]] - GAPDH + NAD – ''Borrelia burgdorferi''<br />
**[[3hja]] - GAPDH + NAD – ''Borrelia burgdorferi''<br />
**[[3e5r]] - RiGAPDH + NAD<br />
**[[3e5r]], [[3v1y]] - RiGAPDH + NAD<br />
**[[2x0n]] – GAPDH + NAD – ''Trypanosoma brucei'' – Laue<br />
**[[2x0n]] – TbGAPDH + NAD – ''Trypanosoma brucei'' – Laue<br />
**[[3k2b]] -  GAPDH + NAD – ''Arabidopsis thaliana''<br />
**[[4p8r]] - TbGAPDH + NAD<br />
**[[3hq4]], [[3k9q]], [[3ksd]], [[3lc1]] - SaGAPDH (mutant) + NAD<br />
**[[3k2b]], [[4z0h]], [[3rvd]] -  GAPDH + NAD – ''Arabidopsis thaliana''<br />
**[[3lvf]] - SaGAPDH + NAD<br />
**[[3hq4]], [[3k9q]], [[3ksd]], [[3lc1]], [[3kv3]] - SaGAPDH (mutant) + NAD<br />
**[[3lvf]], [[3vaz]] - SaGAPDH + NAD<br />
**[[3pfw]] - hGAPDH + NAD – human<br />
**[[3pfw]] - hGAPDH + NAD – human<br />
**[[3sth]] - GAPDH + NAD – ''Toxoplasma gondii''<br />
**[[3sth]] - GAPDH + NAD – ''Toxoplasma gondii''<br />
**[[3pym]] - GAPDH + NAD – yeast<br />
**[[3pym]] - yGAPDH + NAD – yeast<br />
**[[5mvt]] - GAPDH + NAD – ''Neisseria gonorrhoeae''<br />
**[[5jy6]], [[5jye]], [[5jyf]], [[4qx6]] - SagGAPDH + NAD – ''Streptococcus agalactiae''<br />
**[[5jya]] - SagGAPDH (mutant) + NAD<br />
**[[5ddi]] - pGAPDH + NAD – pig<br />
**[[4o63]], [[4o59]] - bGAPDH + NAD – bovine<br />
**[[4k9d]] - GAPDH + NAD – ''Brugia malayi''<br />
**[[4boy]], [[3zcx]], [[3b20]] - SeGAPDH + NAD – ''Synechococcus elongatus''<br />
**[[3l0d]] - GAPDH + NAD – ''Bartonella henselae''<br />
**[[3doc]] - GAPDH + NAD – ''Brucella melitensis''<br />
**[[1vc2]] - GAPDH + NAD – ''Thermos thermophilus''<br />


*NAD-dependent GAPDH ternary complexes containing glyceraldehyde-3-phosphate (G3P)
*NAD-dependent GAPDH ternary complexes containing glyceraldehyde-3-phosphate (G3P)
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**[[3cif]] - CpGAPDH (mutant) + NAD + G3P<br />
**[[3cif]] - CpGAPDH (mutant) + NAD + G3P<br />
**[[3ksz]], [[3l4s]] - SaGAPDH (mutant) + NAD + G3P<br />
**[[3ksz]], [[3l4s]] - SaGAPDH (mutant) + NAD + G3P<br />
**[[1nqo]], [[1nqa]] - GsGAPDH (mutant) + NAD + G3P<br />
**[[1dc4]], [[1dc3]] - EcGAPDH + G3P<br />


*Other NAD-dependent GAPDH ternary complexes
*Other NAD-dependent GAPDH ternary complexes
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**[[3k73]], [[3l6o]] - SaGAPDH + NAD + phosphate<br />
**[[3k73]], [[3l6o]] - SaGAPDH + NAD + phosphate<br />
**[[1uxt]] - TtGAPDH (mutant) + NAD + G1P<br />
**[[1uxt]] - TtGAPDH (mutant) + NAD + G1P<br />
**[[3b1j]], [[3b1k]] - GAPDH + NAD + CP12 – ''Synechococcus elongatus''<br />
**[[3b1j]], [[3b1k]], [[3zdf]] - SeGAPDH + NAD + CP12 <br />
**[[3qv1]] - AtGAPDH + NAD + CP12 <br />
**[[5tso]] - pGAPDH + NAD + phenanthroline <br />
**[[1i33]], [[1i32]] - LmGAPDH  + inhibitor<br />
 
*NADP-dependent GAPDH
 
**[[2duu]], [[2d2i]] - SeGAPDH <br />


*NADP-dependent GAPDH with cofactor NADP
*NADP-dependent GAPDH with cofactor NADP
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**[[1k3t]] - TcGAPDH  + coumarin derivative – ''Trypanosoma cruzi''<br />
**[[1k3t]] - TcGAPDH  + coumarin derivative – ''Trypanosoma cruzi''<br />
**[[1uxv]] - TtGAPDH + NADP + AMP<br />
**[[1uxv]] - TtGAPDH + NADP + AMP<br />
**[[1ml3]] - TtGAPDH + NAD + inhibitor<br />
**[[1uxp]] - TtGAPDH (mutant) + NADP + ADP<br />
**[[1uxp]] - TtGAPDH (mutant) + NADP + ADP<br />
**[[1qxs]] - TtGAPDH + NAD + bisphosphono-glycerate<br />
**[[1uxq]] - TtGAPDH (mutant) + NADP + G1P<br />
**[[1uxq]] - TtGAPDH (mutant) + NADP + G1P<br />
**[[1uxr]] - TtGAPDH (mutant) + NADP + F6P<br />
**[[1uxr]] - TtGAPDH (mutant) + NADP + F6P<br />
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==References==
==References==


1) Voet, D, Voet, J, & Pratt, C. (2008). Fundamentals of biochemistry, third edition. Hoboken, NJ: Wiley & Sons, Inc.
1) Voet, D, Voet, J, & Pratt, C. (2008)
 
2)Family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain. Retrieved from: http://scop.mrc-lmb.cam.ac.uk/scop/data/scop.b.d.c.b.d.html
2)Family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain. Retrieved from: http://scop.mrc-lmb.cam.ac.uk/scop/data/scop.b.d.c.b.d.html


Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Nathan Line, David Canner, Andrew Swart, Alice Harmon, Michal Harel, Alexander Berchansky
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