4onh: Difference between revisions
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==Crystal Structure of DN6 TCR== | ==Crystal Structure of DN6 TCR== | ||
<StructureSection load='4onh' size='340' side='right' caption='[[4onh]], [[Resolution|resolution]] 3.01Å' scene=''> | <StructureSection load='4onh' size='340' side='right' caption='[[4onh]], [[Resolution|resolution]] 3.01Å' scene=''> | ||
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<table><tr><td colspan='2'>[[4onh]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ONH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ONH FirstGlance]. <br> | <table><tr><td colspan='2'>[[4onh]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ONH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ONH FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4onh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4onh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4onh RCSB], [http://www.ebi.ac.uk/pdbsum/4onh PDBsum]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4onh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4onh OCA], [http://pdbe.org/4onh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4onh RCSB], [http://www.ebi.ac.uk/pdbsum/4onh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4onh ProSAT]</span></td></tr> | ||
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
<div class="pdbe-citations 4onh" style="background-color:#fffaf0;"></div> | |||
==See Also== | |||
*[[T-cell receptor|T-cell receptor]] | |||
== References == | == References == | ||
<references/> | <references/> | ||
Revision as of 20:04, 2 January 2017
Crystal Structure of DN6 TCRCrystal Structure of DN6 TCR
Structural highlights
Publication Abstract from PubMedCD1c is a member of the group 1 CD1 family of proteins that are specialized for lipid antigen presentation. Despite high cell surface expression of CD1c on key antigen-presenting cells and the discovery of its mycobacterial lipid antigen presentation capability, the molecular basis of CD1c recognition by T cells is unknown. Here we present a comprehensive functional and molecular analysis of alphabeta T-cell receptor (TCR) recognition of CD1c presenting mycobacterial phosphomycoketide antigens. Our structure of CD1c with the mycobacterial phosphomycoketide (PM) shows similarities to that of CD1c-mannosyl-beta1-phosphomycoketide in that the A' pocket accommodates the mycoketide alkyl chain; however, the phosphate head-group of PM is shifted approximately 6 A in relation to that of mannosyl-beta1-PM. We also demonstrate a bona fide interaction between six human TCRs and CD1c-mycoketide complexes, measuring high to moderate affinities. The crystal structure of the DN6 TCR and mutagenic studies reveal a requirement of five complementarity determining region (CDR) loops for CD1c recognition. Furthermore, mutagenesis of CD1c reveals residues in both the alpha1 and alpha2 helices involved in TCR recognition, yet not entirely overlapping among the examined TCRs. Unlike patterns for MHC I, no archetypical binding footprint is predicted to be shared by CD1c-reactive TCRs, even when recognizing the same or similar antigens. Molecular basis of mycobacterial lipid antigen presentation by CD1c and its recognition by alphabeta T cells.,Roy S, Ly D, Li NS, Altman JD, Piccirilli JA, Moody DB, Adams EJ Proc Natl Acad Sci U S A. 2014 Oct 28;111(43):E4648-57. doi:, 10.1073/pnas.1408549111. Epub 2014 Oct 8. PMID:25298532[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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