|
|
| Line 1: |
Line 1: |
| {{STRUCTURE_3mx2| PDB=3mx2 | SIZE=350| SCENE= |right|CAPTION=Nucleoprotein from Lassa virus trimer complex with TTP (stick model) and Zn+2 ions (grey) [[3mx2]] }}
| |
|
| |
|
| | <StructureSection load='3mx2' size='340' side='right' caption='Nucleoprotein from Lassa virus trimer complex with TTP (stick model) and Zn+2 ions (grey) [[3mx2]]' scene=''> |
|
| |
|
| '''Nucleoproteins''' (NP) are proteins associated with DNA or RNA<ref>PMID:2203758</ref>. NPs which contain RNA are called '''ribonucleoproteins''' (RNPs). The NP RNA-recognition motif is named RRM. The '''small nuclear ribonucleoproteins''' (snRNPs) are RNA-protein complexes which form part of the spliceosome<ref>PMID:15130578</ref>. The '''heterogenous nuclear ribonucleoproteins''' (hnRNP) are RNA-protein complexes which associates with the splicing apparatus and prevent the folding of pre-mRNA<ref>PMID:19099192</ref>. <br /> | | '''Nucleoproteins''' (NP) are proteins associated with DNA or RNA<ref>PMID:2203758</ref>. NPs which contain RNA are called '''ribonucleoproteins''' (RNPs). The NP RNA-recognition motif is named RRM. The '''small nuclear ribonucleoproteins''' (snRNPs) are RNA-protein complexes which form part of the spliceosome<ref>PMID:15130578</ref>. The '''heterogenous nuclear ribonucleoproteins''' (hnRNP) are RNA-protein complexes which associates with the splicing apparatus and prevent the folding of pre-mRNA<ref>PMID:19099192</ref>. <br /> |
| For details on '''heterogenous nuclear ribonucleoproteins''' see [[HnRNP A1]].<br /> | | For details on '''heterogenous nuclear ribonucleoproteins''' see [[HnRNP A1]].<br /> |
| For homology model and multiple sequence alignment see [[User:Michael Strong/H1N1/NP]] and [[User:Michael Strong/H1N1/NP/MSA]]. | | For homology model and multiple sequence alignment see [[User:Michael Strong/H1N1/NP]] and [[User:Michael Strong/H1N1/NP/MSA]]. |
| | | </StructureSection> |
| == 3D Structures of Nucleoprotein == | | == 3D Structures of Nucleoprotein == |
|
| |
|
Revision as of 14:25, 17 November 2016
Nucleoproteins (NP) are proteins associated with DNA or RNA[1]. NPs which contain RNA are called ribonucleoproteins (RNPs). The NP RNA-recognition motif is named RRM. The small nuclear ribonucleoproteins (snRNPs) are RNA-protein complexes which form part of the spliceosome[2]. The heterogenous nuclear ribonucleoproteins (hnRNP) are RNA-protein complexes which associates with the splicing apparatus and prevent the folding of pre-mRNA[3].
For details on heterogenous nuclear ribonucleoproteins see HnRNP A1.
For homology model and multiple sequence alignment see User:Michael Strong/H1N1/NP and User:Michael Strong/H1N1/NP/MSA.
| |
3D Structures of Nucleoprotein3D Structures of Nucleoprotein
Updated on 17-November-2016
{"openlevels":0}
- Nucleoprotein
- 3ouo, 3ov9 – NP – Rift valley fever virus
- 3q7b, 3q7c – LvNP exonuclease domain – Lassa virus
- 3mwp, 3mwt, 3r3l – LvNP
- 3pto - VvNP – Vesicular stomatitis Indiana virus
- 2qvj – VvNP (mutant)
- 2k48 – NP N terminal – Andes virus - NMR
- 1ssk - ScvNP N terminal – SARS coronavirus – NMR
- 4j3k – ScvNP N terminal
- 2gib – ScvNP dimerization domain
- 2jw8 - ScvNP dimerization domain – NMR
- 2ofz, 2og3 - ScvNP RNA-binding domain
- 3hd4 – NP N terminal – Murine hepatitis virus
- 2wfs, 2ymn – IvNP – Cryo EM – Influenza virus
- 4dys, 4iry – IvNP
- 3zdp, 4dyt – IvNP (mutant)
- 2q06, 2iqh, 3tj0 – IvNP
- 2i8b – EvNP C terminal – Ebola virus – NMR
- 3v7o, 4qaz, 4qb0 - EvNP C terminal
- 1yvr – XlNP Ro – Xenopus laevis
- 1wwf – MvNP P10 – Moloney murine leukemia virus – NMR
- 2c86, 2gec – BvNP N terminal – Avian infectious bronchitis virus
- 2ca1, 2ge7, 2ge8 – BvNP dimerization domain
- 2btl, 2bxx – BvNP RRM (mutant)
- 1n93, 1pp1 – NP P40 – Borna disease virus
- 4aqf, 4aqg – NP N – Crimean-Congo hemorrhagic fever virus
- 4fi5 – NP N terminal – Hantaan virus
- 4bgp – LcvNP – La crosse virus
- 4gve – NP C terminal – Tacaribe virus
- 4idu, 4idx – SvNP – Schmallenberg virus
- 4k7e – NP C terminal – Junin virus
- 4o6h – NP C terminal – Lymphocytic choriomeningitis virus
- Nucleoprotein binary complex
- 3mx2, 3mx5 – LvNP + nucleotide
- 3t5n, 3t5q, 4fvu, 4g9z, 4gv3, 4gv6, 4gv9 – LvNP + RNA
- 3ptx, 3pu0, 3pu1, 3pu4, 2gic – VvNP + RNA
- 2wyy – VvNP + poly U – Cryo EM
- 3hhw, 3pmk – VvNP + phosphoprotein
- 3hhz - VvNP + phosphoprotein + RNA
- 4co6 - NP + phosphoprotein – Nipah virus
- 2wj8, 2yhm, 4bkk – NP + RNA – Human respiratory syncytial virus
- 2i91, 1yvp – XlNP Ro + RNA
- 2gtt – NP + RNA – Rabies virus
- 1wwg, 1wwd, 1wwe, 1u6p - MvNP P10 + RNA – NMR
- 3ro5, 4dya, 4dyb, 4dyn, 4dyp, 3tg6 – IvNP + ligand
- 4bbl – IvNP + RNA – Cryo EM
- 3zla – BvNP + RNA – Bunyamwera virus
- 4ijs – BvNP (mutant) + RNA
- 4bhh – LcvNP + poly-U
- 4jng – SvNP + RNA
- 4j1g, 4j1j – NP + RNA – Leanye virus
- 4kxj – ScvNP N terminal + PJ34
- 4li4, 4lm7, 4lm9, 4lmc – ScvNP N terminal + nucleotide
- 4lmt – ScvNP N terminal + quinoline derivative
- 4ypi - EvNP + peptide – Cryo EM
- Ribonucleoprotein
- 2lbw – yRNP subunit 2 residues 36-156 (mutant) – yeast – NMR
- 2lbx - yRNP subunit 2 residues 36-156 – NMR
- 4h5l, 4csg – TvRNP – Toscana virus
- 4csf – TvRNP + RNA
- 4uft – RNP + RNA – Measles virus
- Small nuclear ribonucleoprotein
- 2a3j, 1fht - h-snRNP U1 A RRM – human - NMR
- 2u1a - h-snRNP U1 A RRM (mutant) – NMR
- 1dz5 - h-snRNP U1 A (mutant) – NMR
- 1oia - h-snRNP U1 A RRM
- 2l5i, 2l5j - h-snRNP U1 70kDa residues 131-151 – NMR
- 2vy4, 2vy5 - h-snRNP U11/U12 – NMR
- 2cqj - h-snRNP U3 S4 domain – NMR
- 1x4q - h-snRNP U4/U6 PWI domain - NMR
- 2vrd - h-snRNP U1 C zinc finger domain - NMR
- 1b34 - h-snRNP D1 + h-snRNP D2
- 1d3b - h-snRNP SM D3 SM motif + h-snRNP-associated protein
- 1khm - h-snRNP K C terminal (mutant) – NMR
- 2k3k – Dm-snRNP U1 A RRM1 – Drosophila melanogaster – NMR
- 2aym - Dm-snRNP U1 A
- 2b0g - Dm-snRNP U1 A RBD2 – NMR
- 1n9r, 1n9s – y-snRNP F
- Small nuclear ribonucleoprotein binary complex
- 3plu, 3plv – y-snRNP HINDI domain + ubiquitin-like modifier HUB1
- 4wzj – h-snRNP U4 core domain
- 3p49 - h-snRNP A RRM + glycine riboswitch RNA
- 3iwn - h-snRNP U1 A RRM (mutant) + riboswitch RNA
- 3pgw, 3mum, 3mur, 3mut, 3muv, 3egz - h-snRNP U1 A + DNA riboswitch
- 3mxh, 3irw - h-snRNP U1 A (mutant) + DNA riboswitch
- 3k0j, 1drz, 1m5k, 1m5o, 1m5p, 1m5v, 1u6b, 3ucu, 3ucz, 3ud3, 3ud4 - h-snRNP U1 A (mutant) + RNA
- 3bo2, 3bo3, 3bo4 - h-snRNP U1 A RRM + RNA
- 1sj3, 1sj4, 1sjf, 1vbx, 1vby, 1vbz, 1vc0, 1vc5, 1vc6, 1vc7 - h-snRNP U1 A (mutant) + Hepatitis ribozyme
- 3r1h, 3r1l - h-snRNP U1 A (mutant) + ribozyme
- 1aud - h-snRNP U1 A (mutant) + RNA - NMR
- 3iin - h-snRNP U1 A (mutant) + group I intron + DNA
- 4c4w - h-snRNP A RRM 1 + TSKT K-turn motif + ribosomal protein L7AE
- 3b02, 3b03, 3b04 - h-snRNP U1 A RRM1 + group I intron + RNA
- 1zzn - h-snRNP U1 A RRM1 (mutant) + group I intron + RNA
- 3l3c, 3g8s, 3g8t, 3g96, 3g9c, 2nz4 - h-snRNP U1 A (mutant) + GLMS ribozyme + RNA
- 3hhn - h-snRNP U1 A (mutant) + class I ligase ribozyme
- 2oih, 2oj3 - h-snRNP U1 A + HDV ribozyme
- 3cul, 3cun - h-snRNP U1 A (mutant) + aminoacyl-tRNA synthetase ribozyme
- 3cw1 - h-snRNP U1 in spliceosome
- 2ozb, 3siu, 3siv - h-snRNP U4/U6 + NHP2-like protein + RNA
- 3s6n, 4v98, 4f7u - h-snRNP 8S assembly
- 4m77, 4m78, 4m7a, 4m7d - h-snRNP LSM8 assembly
- 2bn5 - Dm-snRNP U1 70kDa + PSI B box – NMR
- Heterogenous nuclear ribonucleoprotein
- 3s01 – m-hnRNP L RRM3 domain – mouse
- 3tyt - m-hnRNP L
- 2e5i - m-hnRNP L RRM – NMR
- 2db1 - m-hnRNP F RRM – NMR
- 1ha1, 1l3k, 1up1 - h-hnRNP A1 RRM
- 2lyv - h-hnRNP A1 RRM 1-2 – NMR
- 2up1 - h-hnRNP A1 RRM 1-2 + DNA
- 3s7r - h-hnRNP A/B
- 1x4b - h-hnRNP A2/B1 RRM – NMR
- 1txp - h-hnRNP C oligomerization domain – NMR
- 1wf2 - h-hnRNP C1/C2 RRM – NMR
- 1hd0, 1hd1, 1iqt - h-hnRNP D0 RRM – NMR
- 2hgl, 2hgm, 2hgn - h-hnRNP F QRRM – NMR
- 1wg5, 1wez, 2lxu - h-hnRNP H RRM – NMR
- 2ad9, 2adb, 2adc - h-hnRNP I – NMR
- 1zzk - h-hnRNP K KH domain
- 3r27, 3t08 - h-hnRNP L RRM
- 2do0, 2dh9, 2dgv - h-hnRNP M RRM – NMR
- 2dgu - h-hnRNP Q RRM – NMR
- 2dk2 - h-hnRNP R RRM – NMR
- Heterogenous nuclear ribonucleoprotein binary complex
- 2kfy, 2kg0, 2kg1 - h-hnRNP F QRRM + DNA – NMR
- 2z5n, 2z5o, 2ot8 - h-hnRNP D0 CTD + transportin-1
- 1u1k, 1u1l, 1u1m, 1u1n, 1u1o, 1u1p, 1u1q, 1u1r, 1up1 - h-hnRNP A1 RRM + DNA
- 1pgz, 1po6 - h-hnRNP A1 + DNA + inhibitor
- 1wtb, 1x0f - h-hnRNP D0 RRM + DNA – NMR
- 1zzi, 1zzj - h-hnRNP K KH domain + DNA
- 1j5k - h-hnRNP K KH domain + DNA – NMR
ReferencesReferences
- ↑ Echols H. Nucleoprotein structures initiating DNA replication, transcription, and site-specific recombination. J Biol Chem. 1990 Sep 5;265(25):14697-700. PMID:2203758
- ↑ Yong J, Wan L, Dreyfuss G. Why do cells need an assembly machine for RNA-protein complexes? Trends Cell Biol. 2004 May;14(5):226-32. PMID:15130578 doi:http://dx.doi.org/10.1016/j.tcb.2004.03.010
- ↑ He Y, Smith R. Nuclear functions of heterogeneous nuclear ribonucleoproteins A/B. Cell Mol Life Sci. 2009 Apr;66(7):1239-56. doi: 10.1007/s00018-008-8532-1. PMID:19099192 doi:http://dx.doi.org/10.1007/s00018-008-8532-1