5lo9: Difference between revisions

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'''Unreleased structure'''


The entry 5lo9 is ON HOLD  until Paper Publication
==Thiosulfate dehydrogenase (TsdBA) from Marichromatium purpuratum - "as isolated" form==
<StructureSection load='5lo9' size='340' side='right' caption='[[5lo9]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[5lo9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LO9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LO9 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene>, <scene name='pdbligand=THJ:THIOSULFATE'>THJ</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lo9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lo9 OCA], [http://pdbe.org/5lo9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lo9 RCSB], [http://www.ebi.ac.uk/pdbsum/5lo9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lo9 ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The enzymes of the thiosulfate dehydrogenase (TsdA) family are wide-spread diheme c-type cytochromes. Here, redox carriers were studied mediating the flow of electrons arising from thiosulfate oxidation into respiratory or photosynthetic electron chains. In a number of organisms, including Thiomonas intermedia and Sideroxydans lithotrophicus the tsdA gene is immediately preceded by tsdB encoding for another diheme cytochrome. Spectrophotometric experiments in combination with enzymatic assays in solution showed that TsdB acts as an effective electron acceptor of TsdA in vitro when TsdA and TsdB originate from the same source organism. While TsdA covers a range from 300 mV to +150 mV, TsdB is redox active between -100 to +300 mV, thus enabling electron transfer between these hemoproteins. The three-dimensional structure of the TsdB-TsdA fusion protein from the purple sulfur bacterium Marichromatium purpuratum was solved by X-ray crystallography to 2.75 A resolution providing insights into internal electron transfer. In the oxidized state, this tetraheme cytochrome c contains three hemes with axial His/Met ligation, while heme 3 exhibits the His/Cys coordination typical for TsdA active sites. Interestingly, thiosulfate is covalently bound to Cys330 on heme 3. In several bacteria including Allochromatium vinosum, TsdB is not present, precluding a general and essential role for electron flow. Both, AvTsdA and the MpTsdBA fusion react efficiently in vitro with high potential iron sulfur protein from A. vinosum (Em +350 mV). HiPIP not only acts as direct electron donor to the reaction center in anoxygenic phototrophs but can also be involved in aerobic respiratory chains.


Authors:  
Electron Accepting Units of the Diheme Cytochrome c TsdA, a Bifunctional Thiosulfate Dehydrogenase/Tetrathionate Reductase.,Kurth JM, Brito JA, Reuter J, Flegler A, Koch T, Franke T, Klein EM, Rowe SF, Butt JN, Denkmann K, Pereira IA, Archer M, Dahl C J Biol Chem. 2016 Sep 30. pii: jbc.M116.753863. PMID:27694441<ref>PMID:27694441</ref>


Description:  
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
<div class="pdbe-citations 5lo9" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Archer, M]]
[[Category: Brito, J A]]
[[Category: Butt, J N]]
[[Category: Dahl, C]]
[[Category: Denkmann, K]]
[[Category: Flegler, A]]
[[Category: Franke, T]]
[[Category: Klein, E]]
[[Category: Koch, T]]
[[Category: Kurth, J M]]
[[Category: Pereira, I A.C]]
[[Category: Reuter, J]]
[[Category: Rowe, S]]
[[Category: Cytochrome c]]
[[Category: Electron acceptor]]
[[Category: Oxidoreductase]]
[[Category: Respiratory chain]]

Revision as of 12:54, 19 October 2016

Thiosulfate dehydrogenase (TsdBA) from Marichromatium purpuratum - "as isolated" formThiosulfate dehydrogenase (TsdBA) from Marichromatium purpuratum - "as isolated" form

Structural highlights

5lo9 is a 2 chain structure. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

The enzymes of the thiosulfate dehydrogenase (TsdA) family are wide-spread diheme c-type cytochromes. Here, redox carriers were studied mediating the flow of electrons arising from thiosulfate oxidation into respiratory or photosynthetic electron chains. In a number of organisms, including Thiomonas intermedia and Sideroxydans lithotrophicus the tsdA gene is immediately preceded by tsdB encoding for another diheme cytochrome. Spectrophotometric experiments in combination with enzymatic assays in solution showed that TsdB acts as an effective electron acceptor of TsdA in vitro when TsdA and TsdB originate from the same source organism. While TsdA covers a range from 300 mV to +150 mV, TsdB is redox active between -100 to +300 mV, thus enabling electron transfer between these hemoproteins. The three-dimensional structure of the TsdB-TsdA fusion protein from the purple sulfur bacterium Marichromatium purpuratum was solved by X-ray crystallography to 2.75 A resolution providing insights into internal electron transfer. In the oxidized state, this tetraheme cytochrome c contains three hemes with axial His/Met ligation, while heme 3 exhibits the His/Cys coordination typical for TsdA active sites. Interestingly, thiosulfate is covalently bound to Cys330 on heme 3. In several bacteria including Allochromatium vinosum, TsdB is not present, precluding a general and essential role for electron flow. Both, AvTsdA and the MpTsdBA fusion react efficiently in vitro with high potential iron sulfur protein from A. vinosum (Em +350 mV). HiPIP not only acts as direct electron donor to the reaction center in anoxygenic phototrophs but can also be involved in aerobic respiratory chains.

Electron Accepting Units of the Diheme Cytochrome c TsdA, a Bifunctional Thiosulfate Dehydrogenase/Tetrathionate Reductase.,Kurth JM, Brito JA, Reuter J, Flegler A, Koch T, Franke T, Klein EM, Rowe SF, Butt JN, Denkmann K, Pereira IA, Archer M, Dahl C J Biol Chem. 2016 Sep 30. pii: jbc.M116.753863. PMID:27694441[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Kurth JM, Brito JA, Reuter J, Flegler A, Koch T, Franke T, Klein EM, Rowe SF, Butt JN, Denkmann K, Pereira IA, Archer M, Dahl C. Electron Accepting Units of the Diheme Cytochrome c TsdA, a Bifunctional Thiosulfate Dehydrogenase/Tetrathionate Reductase. J Biol Chem. 2016 Sep 30. pii: jbc.M116.753863. PMID:27694441 doi:http://dx.doi.org/10.1074/jbc.M116.753863

5lo9, resolution 2.75Å

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