3aq6: Difference between revisions
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==Crystal structure of truncated hemoglobin from Tetrahymena pyriformis, Fe(III) form== | ==Crystal structure of truncated hemoglobin from Tetrahymena pyriformis, Fe(III) form== | ||
<StructureSection load='3aq6' size='340' side='right' caption='[[3aq6]], [[Resolution|resolution]] 1.93Å' scene=''> | <StructureSection load='3aq6' size='340' side='right' caption='[[3aq6]], [[Resolution|resolution]] 1.93Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3aq6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[3aq6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Tetpy Tetpy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AQ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AQ6 FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3aq5|3aq5]], [[3aq7|3aq7]], [[3aq8|3aq8]], [[3aq9|3aq9]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3aq5|3aq5]], [[3aq7|3aq7]], [[3aq8|3aq8]], [[3aq9|3aq9]]</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3aq6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aq6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3aq6 RCSB], [http://www.ebi.ac.uk/pdbsum/3aq6 PDBsum]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3aq6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aq6 OCA], [http://pdbe.org/3aq6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3aq6 RCSB], [http://www.ebi.ac.uk/pdbsum/3aq6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3aq6 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
<div class="pdbe-citations 3aq6" style="background-color:#fffaf0;"></div> | |||
==See Also== | ==See Also== | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Tetpy]] | ||
[[Category: Igarashi, J]] | [[Category: Igarashi, J]] | ||
[[Category: Kobayashi, K]] | [[Category: Kobayashi, K]] | ||
Revision as of 20:43, 11 August 2016
Crystal structure of truncated hemoglobin from Tetrahymena pyriformis, Fe(III) formCrystal structure of truncated hemoglobin from Tetrahymena pyriformis, Fe(III) form
Structural highlights
Publication Abstract from PubMedTruncated hemoglobins (trHbs) are distributed from bacteria to unicellular eukaryotes and have roles in oxygen transport and nitric oxide detoxification. It is known that trHbs exist in ciliates of the Tetrahymena group, but trHb structure and function remain poorly understood. To investigate trHb function with respect to stability of bound oxygen and protein structure, we measured the oxygen binding kinetics of Tetrahymena pyriformis trHb, and determined the crystal structure of the protein. The O(2) association and dissociation rate constants of T. pyriformis trHb were 5.5 muM(-1 )s(-1) and 0.18 s(-1), respectively. The autooxidation rate constant was 3.8 x 10(-3) h(-1). These values are similar to those of HbN from Mycobacterium tuberculosis. The three-dimensional structure of an Fe(II)-O(2) complex of T. pyriformis trHb was determined at 1.73-A resolution. Tyr25 (B10) and Gln46 (E7) were hydrogen-bonded to a heme-bound O(2) molecule. Tyr25 donated a hydrogen bond to the terminal oxygen atom, whereas Gln46 hydrogen-bonded to the proximal oxygen atom. Furthermore, Tyr25 was hydrogen-bonded to the Gln46 and Gln50 (E11) residues. Mutations at Tyr25, Gln46, and Gln50 increased the O(2) dissociation and autooxidation rate constants. An Fe(III)-H(2)O complex of T. pyriformis trHb was formed following reaction of the Fe(II)-O(2) complex of T. pyriformis trHb, in a crystal state, with nitric oxide. This suggests that T. pyriformis trHb functions in nitric oxide detoxification. A hydrogen-bonding network formed by the B10-E7-E11 residues of a truncated hemoglobin from Tetrahymena pyriformis is critical for stability of bound oxygen and nitric oxide detoxification.,Igarashi J, Kobayashi K, Matsuoka A J Biol Inorg Chem. 2011 Feb 5. PMID:21298303[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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